Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq376 324 4e-83 >seq376 Length=8930 Score = 324 bits (358), Expect = 4e-83 Identities = 1066/1633 (65%), Gaps = 38/1633 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| |||| || | | ||| ||||| || | | | ||| | | || Sbjct 6772 TTCACACACGCGTCGCCCACGCTTTTCAACGCTGGCACGCCCCAAGCCCAGCTCGCGTCG 6713 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || ||| ||||| |||| ||||| || |||| | Sbjct 6712 TGCTTCCTGGTTGACATGAAGGATGACAGCATTGAGGGCATCTACGACACCCTCAAGACT 6653 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || ||| | || ||||||| || || || || || | | || ||||| | || || Sbjct 6652 TGCGCTATGATCTCCAAGACGGCGGGTGGCATCGGGATGAACG-TCCACCGCATCCGCGC 6594 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 || | | |||||| |||||| || ||| || || || | || || ||||| Sbjct 6593 CACTGG-CTCATACATTGCCGGCACCAACGG-TACATCCAACGGCATTGTCCCTATGCTG 6536 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || ||||| |||| || || | || || |||||||||||| ||||| ||| || Sbjct 6535 CGCGTGTTCAACAACACGGCCCGCTATGTGGACCAGGGTGGAAACAAGCGGCCAGGCGCC 6476 Query 363844 TT-TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 || ||| || || || ||||| ||||| || | || ||||| || || || || || Sbjct 6475 TTCTGC-ATCTACCTGGAGCCGTGGCATGCTGACGTGTTCGAGTTCCTCGACCTGCGCAA 6417 Query 363903 AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||| || || ||||| | || || || || |||||| || || ||| | | || Sbjct 6416 GAACCATGGCAAGGAGGAGGTACGCGCCCGCGACCTGTTCCTGGCGCTCTGGATCCCGGA 6357 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAA 364020 || || |||||||| |||||| | | | | | ||| | || | ||||| | || Sbjct 6356 CCTGTTCATGAAGCGTGTGGAG--AAGAACGGCGACTGGACGCTGATGTGCCCCAATGAG 6299 Query 364021 TGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 || || ||||| |||| | || ||||| | | || | ||||| ||||| || Sbjct 6298 TGCCCGGGTCTGGCCGACTGCTACGGCGACGAGTTCGAGGCCTTGTACGAGAAGTACGAG 6239 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 |||||| | ||| || | || |||||||| |||| |||| || |||| Sbjct 6238 AAGGAGGGCCGTGGCCGTCGCACGGTCAAGGCCCAGAAGCTGTGGTATGCCGTCCTGGAG 6179 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 |||||| ||||| || | || | ||| ||||||| || |||||||||||| | Sbjct 6178 GCGCAGACGGAGACCGGCAACCCGTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGC 6119 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATA 364259 |||||| || |||| || || || | |||| | ||||| || || |||||||| || || Sbjct 6118 AACCAGAAGAACCTGGGCACCATCC-GCAGCTCCAACCTGTGCACAGAGATTATCGAGTA 6060 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 | ||| ||||| ||| || || || ||||| ||||| | ||||| ||| | ||||| Sbjct 6059 CTGCGCGCCCGATGAGGTGGCGGTGTGCAACCTGTCGTCGCTGGCGCTGCCGTCTTTTGT 6000 Query 364320 AAAAGATGGTA------CTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCT 364371 | | | | | | ||| |||| | ||| | || || || | | || | Sbjct 5999 GGACTACGCCAACGAGACGTACGACTTCCAGAAGCTTCACGAGGTCACGCAGGTGGTGGT 5940 Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG---- 364426 | |||| || || | |||||| || || || || | || || || || Sbjct 5939 GC--GCAACCTGAACCGTATCATCGACGTCAACTACTACCCTGTGCCGGAGGCGCGCAAC 5882 Query 364427 AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT 364486 ||| || |||||||| || ||||| ||| | ||||| |||||| | || || | | Sbjct 5881 AGC-----AACATGCGTCACCGGCCGATCGGTGTGGGTGTCCAGGGCTTGGCGGATGCGT 5827 Query 364487 TTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCT 364546 | || ||| |||| | ||||| ||||| || || |||| || || ||| |||||| Sbjct 5826 TCCTGGCGCTGCGGATGCCTTTTGAGTCGCCGGAGGCGCGTGAGCTCAACAAGCAGATCT 5767 Query 364547 TTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAA 364606 |||| || || || || || |||| || || || || |||| || |||| Sbjct 5766 TTGAGACGATCTACCACGCTGCGCTGACGGCGTCATGCGACCTGGCGAAGCTGGAGGGCG 5707 Query 364607 AGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGA 364666 |||||| || || |||||||| || | |||||||| | | ||||||||| | ||| Sbjct 5706 TGTACTCGACGTACGAGGGGTCTCCCGTGTCGCAGGGCATCCTGCAGTTTGATATGTGGG 5647 Query 364667 ATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATG 364726 | |||| ||| | | || ||| ||||||| |||| ||| ||| | ||| |||| | Sbjct 5646 ACGTCAAGCCGACGGACCTGTGGGACTGGGACTCGCTGCGTCTCAAGATCAAGGAGCACG 5587 Query 364727 GTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786 | |||||| || | ||||| ||||| ||||| || || | |||||||| | Sbjct 5586 GCGTGCGCAACAGTCTGTTGGTGGCGCCGATGCCGACGGCATCGACCTCGCAGATCCTGG 5527 Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCG 364846 | |||||||| |||||||| || | || ||| | || ||||| || || | | Sbjct 5526 GCAACAACGAATGCTTCGAGCCATACACGTCCAACATCTACCAGCGCCGTGTGCTGGCAG 5467 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 | || || | ||| || || | || | ||||| || ||| || |||||| Sbjct 5466 GCGAGTTCCAGGTGGTCAACCCATGGCTTCTGAAGGACCTGGTGGACATGGGCCTGTGGT 5407 Query 364907 GTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGAT 364966 |||| |||||||||| ||||| || | || || || |||||||| || Sbjct 5406 CGGACAACATGAAGAACCGCATCATTGCAGAGGGCGGGTCGGTCCAGAACATCCCGAACA 5347 Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026 | || | || | ||| | | ||||| || || ||||| || || ||| || | Sbjct 5346 TCCCGGCTGAAATCAAGGCGCTGTACAAGACAGTGTGGGAGATCTCGCAGCGCACGATTG 5287 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | | ||||||||||| || || || || ||| ||| |||||| | ||| | || Sbjct 5286 TGCAGATGGCGGCCGACCGTGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACATTCACA 5227 Query 365087 TG-ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG-TGGAAATCCGG 365144 || | || || || | |||| |||| ||||||||| |||||| ||||| | || Sbjct 5226 TGCGCGCA-CCGACTATGGGCAAGATTACCAGCATGCATTT-TACGGGCTGGAAGTTGGG 5169 Query 365145 TCTTAAGACAGGT 365157 || ||||| ||| Sbjct 5168 ACTCAAGACCGGT 5156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303338503906928