Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq373 140 2e-28
seq364 140 2e-28
seq897 125 5e-24
seq233 87.8 1e-12
seq204 87.8 1e-12
>seq373
Length=8978
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6879 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6820
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6819 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6785
>seq364
Length=9211
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6879 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6820
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6819 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6785
>seq897
Length=67576
Score = 125 bits (138), Expect = 5e-24
Identities = 214/308 (69%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 6183 CGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAG 6242
||| |||| |||||| |||||||||||||| ||| ||||||| ||||| ||||
Sbjct 1782 CGTGATGTCACGGACGTCTTCTACCGCTACAAGATGGAGCGCATCCAGACCAAGATCGAA 1841
Query 6243 GGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGA----AGTCGCTAAGGC 6298
|| ||||| ||||| || || |||| | |||| || ||||| ||||| || |
Sbjct 1842 GGCAAGGGCAACGGCATCAAGACCG---TGGTCACCA-ACCTGAGCAGCGTCGCCCAGTC 1897
Query 6299 GCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGAC 6358
||| | ||||| ||||| |||| || || || || || | || || ||||| |||||
Sbjct 1898 GCTGGCCCGCCCGGCCACGTACCTGATCAAGTACTTTGGCTTTGAGCTCGGCGCCCAGAC 1957
Query 6359 GCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCT 6418
| || | |||| |||| ||| | ||||| | || | | ||||||||
Sbjct 1958 CAACAGCGACCCGCCCGACGACCGCTGGATCATCAACGGCGCCCACGAGGCCGCCAAGCT 2017
Query 6419 GCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCC 6478
|||||||| || |||||||| || ||||||||| || || | | ||| | |||||
Sbjct 2018 GCAGGACTATCTCGACGGCTTCATCTCCAAGTTTGTCCTCTGCAAGAAGTGCAAGAACCC 2077
Query 6479 GGAGACCG 6486
|||||||
Sbjct 2078 CGAGACCG 2085
>seq233
Length=18884
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || |||| ||||| || || ||||||||||| || || ||||| || |||
Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || |||| || | || || || ||||| || || || || || || | |||
Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| || || ||| || || | | || || | || || ||
Sbjct 1469 ATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCGCTGCTCTCCACC 1528
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | ||||| || || ||||||| ||| || ||||| |||||||||
Sbjct 1529 TCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1576
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||| | ||||| || || ||||||||||| ||||| ||||| || |||
Sbjct 1577 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1636
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || || || || || || || || || || | |||
Sbjct 1637 AGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGG 1696
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| || || ||| || || | || || || | || || ||
Sbjct 1697 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACC 1756
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | ||||| || || ||||||| ||| || || || |||||||||
Sbjct 1757 TCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATG 1804
>seq204
Length=21219
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| ||||| || || ||||||||||| || || ||||| || || | || ||
Sbjct 5899 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 5840
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || ||||| || || ||||| || || |||| |||| ||| || |||
Sbjct 5839 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 5780
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || || ||| ||||| | || || || || || || || | || ||
Sbjct 5779 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTGATG 5720
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || ||||| | ||| || ||||| |||||||| ||
Sbjct 5719 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334943509719224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |