Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 2e-11 >seq1 Length=398088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 191/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||| ||||| | |||||| || | ||||| |||| |||||||| || ||| Sbjct 36476 ATGTATGTGTCGATGAGCAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGG 36417 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || ||||||||||| | || || | | ||| || || || | ||| || || Sbjct 36416 AAGCCGTAGAAACAACGGGCCTCGGGAACCTGGACCTCGCCGCTGAAGCGCTCGACCAGG 36357 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || ||||| || ||||| || || || || || || | || || ||| || Sbjct 36356 TTCTCGTTGACAATGCCATCCGACGCGGCGAAGAAGGCAAGGATGTGGGATATGAAGAAC 36297 Query 93542 TTCTCATCATCTTTAA---GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||| ||||| | | | || | ||| ||| | || || || ||||||| || Sbjct 36296 CGCTCGTCATCGGTCAGGCGGTTGTTCCAGTCGTGCATGTCCTTGGACAGATCGATCTCC 36237 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || | ||||| ||||| || || || || |||||||| | ||| || Sbjct 36236 TCAGCCGTCCAGAACGAGGCCTCAGCCTTCTTGTACATCTGCCAGAT 36190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854507472960