Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq204 111 1e-19
seq233 96.9 3e-15
seq23 86.0 5e-12
>seq204
Length=21219
Score = 111 bits (122), Expect = 1e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || || || || || | || || || || |||| ||||| ||||| | |
Sbjct 5682 AAGATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGAGC 5741
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || || | ||| || |||| || || || ||||||||||| || || |||||
Sbjct 5742 TCGGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 5801
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || || || |||||||| ||| | ||||| ||||||| ||||||| |||
Sbjct 5802 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 5861
Query 22396 AACATTCAAAAAGA 22409
||||| || || ||
Sbjct 5862 AACATCCAGAAGGA 5875
>seq233
Length=18884
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || ||| |||| || || ||||| | |
Sbjct 2259 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 2200
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || ||||| ||||||||||| || || || || ||
Sbjct 2199 GACACGATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 2140
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | |||||| |||||| | ||| ||||||
Sbjct 2139 CAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACAAC 2080
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | || | || | || ||||||| |||
Sbjct 2079 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGCGGT 2032
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || ||| |||| || || ||||| | |
Sbjct 2031 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 1972
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || ||||| || |||||||| || || || || ||
Sbjct 1971 GACACGATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCGCCGGACCAG 1912
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | ||||| |||||| | ||| ||||||
Sbjct 1911 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACCCTGAGCGACTACAAC 1852
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 1851 ATTCAGAAGGAGTCGAC 1835
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | || || || ||| | || || || ||||| | || |
Sbjct 1803 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1744
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || || || ||||||||||| || || || || ||
Sbjct 1743 GACACGATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1684
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||| | |||||| || || | ||||| ||||||
Sbjct 1683 CAGCGGCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGGCGGACGCTGTCCGACTACAAC 1624
Query 22399 ATTCAAAAAGA 22409
||||| || ||
Sbjct 1623 ATTCAGAAGGA 1613
>seq23
Length=165582
Score = 86.0 bits (94), Expect = 5e-12
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || || || || ||||| | || || || || | || || |
Sbjct 62003 TTTCGTGAAGACCCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGAT 62062
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| || || || || || || || ||
Sbjct 62063 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCT 62122
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| ||||| ||||| ||| | ||||| ||| ||| | ||||| |||||||| || ||
Sbjct 62123 GATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAACATCCAGAA 62182
Query 22407 AGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || | || | || |||| ||||||| |||
Sbjct 62183 GGAGTCGACTCTGCACCTGGTGCTGCGTCTGCGCGGTGGT 62222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419723375646760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |