Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq600 98.7 2e-15
seq197 87.8 4e-12
seq23 86.0 1e-11
seq1 86.0 1e-11
>seq600
Length=83923
Score = 98.7 bits (108), Expect = 2e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233
|||| || ||||| || ||||| ||||| || || ||||| | ||||| ||||||
Sbjct 61880 TCATCGGCCCCAACGGCGCGGGCAAGTCGACGCTGATCAAGCTGCTGACGGGCGAGGTGG 61939
Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293
| ||| ||| || |||||| |||||| |||| || | ||| || ||||
Sbjct 61940 TGCCCAGCTCGGGCAAGGTGGAGAAGCACCCCAACCTGCGCATCGGCTACATCAAGCAGC 61999
Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353
|||| || | ||| |||||| |||||||| | ||| || ||||| ||| | |||||||
Sbjct 62000 ACGCGCTCGAGCACGTCGAGATGCACCTGGAGAAGACGCCCAACCAGTACCTGCAGTGGC 62059
Query 280354 GCTATGC 280360
|||||||
Sbjct 62060 GCTATGC 62066
>seq197
Length=21987
Score = 87.8 bits (96), Expect = 4e-12
Identities = 154/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| ||||| |||| ||||||||||| || |||| ||||| ||||| |||
Sbjct 7281 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCGTACGGTGCCAAGATCCTGCTGAAC 7222
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| | ||||| ||| | || || || || ||||||||| || ||
Sbjct 7221 CAGACCCACCTGCGTCTGAAGCGCGGCCAGCGCTACGGCCTGTGCGGTCCCAACGGTTCG 7162
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| || || ||||||||||| || | ||| | || || || || || |||
Sbjct 7161 GGCAAGTCGACGCTGATGCGCGCCATCAACAATGAGCAGGTCGAGGGCTTCCCCAA-GCA 7103
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
||||| | ||| |||| || ||||||||| | |||||
Sbjct 7102 GAGCGAGGTCAAGACCGTGTTCGTCGAGCACGACCTGGACTC 7061
>seq23
Length=165582
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 146889 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 146948
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 146949 CCCGCATCGGGC 146960
>seq1
Length=398088
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 297045 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 297104
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 297105 CCCGCATCGGGC 297116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027824895080264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |