Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq600 98.7 2e-15 seq197 87.8 4e-12 seq23 86.0 1e-11 seq1 86.0 1e-11 >seq600 Length=83923 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 |||| || ||||| || ||||| ||||| || || ||||| | ||||| |||||| Sbjct 61880 TCATCGGCCCCAACGGCGCGGGCAAGTCGACGCTGATCAAGCTGCTGACGGGCGAGGTGG 61939 Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 | ||| ||| || |||||| |||||| |||| || | ||| || |||| Sbjct 61940 TGCCCAGCTCGGGCAAGGTGGAGAAGCACCCCAACCTGCGCATCGGCTACATCAAGCAGC 61999 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 |||| || | ||| |||||| |||||||| | ||| || ||||| ||| | ||||||| Sbjct 62000 ACGCGCTCGAGCACGTCGAGATGCACCTGGAGAAGACGCCCAACCAGTACCTGCAGTGGC 62059 Query 280354 GCTATGC 280360 ||||||| Sbjct 62060 GCTATGC 62066 >seq197 Length=21987 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| ||||||||||| || |||| ||||| ||||| ||| Sbjct 7281 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCGTACGGTGCCAAGATCCTGCTGAAC 7222 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | ||||| ||| | || || || || ||||||||| || || Sbjct 7221 CAGACCCACCTGCGTCTGAAGCGCGGCCAGCGCTACGGCCTGTGCGGTCCCAACGGTTCG 7162 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| || || ||||||||||| || | ||| | || || || || || ||| Sbjct 7161 GGCAAGTCGACGCTGATGCGCGCCATCAACAATGAGCAGGTCGAGGGCTTCCCCAA-GCA 7103 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| |||| || ||||||||| | ||||| Sbjct 7102 GAGCGAGGTCAAGACCGTGTTCGTCGAGCACGACCTGGACTC 7061 >seq23 Length=165582 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 146889 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 146948 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 146949 CCCGCATCGGGC 146960 >seq1 Length=398088 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 297045 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 297104 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 297105 CCCGCATCGGGC 297116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027824895080264