Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq376 506 4e-138
seq1 230 4e-55
>seq376
Length=8930
Score = 506 bits (560), Expect = 4e-138
Identities = 1279/1908 (67%), Gaps = 95/1908 (5%)
Strand=Plus/Plus
Query 243735 CCACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793
|||| ||||||||| ||| |||| | || || | || | |||||||||||| ||||||
Sbjct 5104 CCACCGTGAACTGGATCGGCTGCG-CTGCCGCTTGCGTGCGCAGGTAGTACATACCGGTC 5162
Query 243794 TTGAGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCT 243851
|||||||| ||| |||| | | |||||| || | ||| ||| ||
Sbjct 5163 TTGAGTCCCAACTT--CCAGCCCGTAAAATGCATGCTGGTAATCTTGCCCAT----AG-- 5214
Query 243852 TTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC- 243910
| ||| ||| || | |||||| ||||| |||||||| ||| | ||||
Sbjct 5215 -TCGGTG-----CGCGCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAACG-CGCCA 5267
Query 243911 CGCTCTGCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGAT 243969
|| || || ||||| | | || | ||| || ||||| || | |||||||| |
Sbjct 5268 CGGTCGGCCGCCATCTGCACAATCGTGCG-CTGCGAGATCTCCCACACTGTCTTGTACAG 5326
Query 243970 GGGCTTGAGGTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCC--CTTGTGGACGA 244025
| ||||| | | |||| |||| |||||||| ||||| || | | || | |
Sbjct 5327 CGCCTTGATTTCAGCCGGGATG--TTCGGGATGTTCTGGACCGACCCGCCCTCTGCA--A 5382
Query 244026 TGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGT 244085
||| || | |||||| || ||||||||||| | | |||| ||| |||
Sbjct 5383 TGATGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTT---CAGAA 5439
Query 244086 GCCT---GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGC 244142
||| ||| |||||||| ||||| || | |||||| ||||||||||||| ||||
Sbjct 5440 GCCATGGGTTGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACG 5499
Query 244143 TGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGG 244202
|| ||||||| || || |||||||||| ||||||| || || |||||||| |
Sbjct 5500 TGTATGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCG 5559
Query 244203 GCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC 244262
||| ||||| ||||||||| | |||||||||| || ||| ||| | ||| || ||
Sbjct 5560 GCGCCACCAACAGACTGTTGCGCACGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCC 5619
Query 244263 AGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCC 244322
||||||||| | ||| ||| | |||| | ||||||| ||||||||||| | |
Sbjct 5620 AGTCCCACAGGTCCG--------TCG-GCTTGACGTCCCACATATCAAACTGCAGGATGC 5670
Query 244323 CCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTAC 244382
||| ||||| |||||||| |||| ||| || || ||| ||||| | |
Sbjct 5671 CCTGCGACACGGGAGACCCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGC 5730
Query 244383 AGCTCTC-GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG 244441
| | | ||| || || |||| |||||| ||||| |||||| |||||| | || ||
Sbjct 5731 ATGACGCCGTC-AGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGC 5789
Query 244442 GCCTTGCCGCAGGTGAAGGGG-ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500
|||| | || | || || || | || | || ||| | || |||| ||||| ||
Sbjct 5790 GCCTC-CGGCGACTCAAAAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGAC 5848
Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG---CGCATGGCTTCGGGCACGGGGTA 244557
|| | ||||| || | ||| ||| ||||| | ||| || || ||||| |||||
Sbjct 5849 ACCCACACCGATCGGCCGGTGACGCATGTTGCTGTTGCGC---GCCTCCGGCACAGGGTA 5905
Query 244558 AAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCC 244615
||||| ||||||| | ||| |||||||| | || |||| ||| |||
Sbjct 5906 GTAGTTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTGCGT--GACCTCGTGA 5963
Query 244616 AGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG 244675
||| ||| ||||||||| | || | |||| | ||| || || |
Sbjct 5964 AGCTTCTGGAAGTCGTAC------GTCTCGTTGGCGTAG----TCCACAAAA-------G 6006
Query 244676 AGGGCGACGCTGGC-----CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGA 244730
| ||| ||| || ||||||||| || |||||||| || | | ||||| ||
Sbjct 6007 ACGGCAGCGCCAGCGACGACAGGTTGCACACCGCCACCTCATCGGGCGCGCAGTACTCGA 6066
Query 244731 CAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG 244790
|||||| ||||| ||||| || |||||||||||||| || || ||| ||||
Sbjct 6067 TAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGC 6126
Query 244791 CGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850
||||||| ||||||||| |||||||| || |||||||| ||| || | ||||
Sbjct 6127 GGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGA 6186
Query 244851 CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGC 244910
|| | ||| || | | ||||||||||| | || | |||||| ||||||
Sbjct 6187 CGGCATACCACAGCTTCTGGGCCTTGACCGTGCGACGGCCACGGCCCTCCTTCTCGTACT 6246
Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970
||||| ||||||||||||| ||| || ||| | || || |||||| |
Sbjct 6247 TCTCGTACAAGGCCTCGAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGG 6306
Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030
||||||| || |||| |||||| | || || | || |||||| ||||| |||||||
Sbjct 6307 GGCACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCC 6366
Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090
|||| ||| |||| ||||| | || | ||| ||| |||| |||||| | ||| |
Sbjct 6367 AGAGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGT 6426
Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150
| | || || || ||||| | ||||| ||||||| ||||| || |||||| ||||
Sbjct 6427 CGAGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCC 6486
Query 245151 GCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGC 245209
||||||| || ||||||||||| | | || | |||||| | |||||| ||||
Sbjct 6487 GCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTG-TTGTTGAACACGCGCAGCATAGGG 6545
Query 245210 ACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTG 245269
|| |||||||| || ||||||||||| ||||| | ||| || | | || | |
Sbjct 6546 ACAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGCGGATGCGG 6605
Query 245270 CTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTG 245329
|| | ||| || | || || || ||||||||| | ||||| |||||| ||||
Sbjct 6606 TGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTG 6665
Query 245330 TCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGG 245389
|| |||||||| |||||||| |||||||| | ||| ||||| || | |||| |
Sbjct 6666 TCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCT-G 6724
Query 245390 GGCTTGGGGC-TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448
|||||||||| ||| | |||||| || ||||| ||||| || ||| | | | ||
Sbjct 6725 GGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGAACTTGTTGGA 6784
Query 245449 GAGGAACCCGTACGTCTGGAGCA-GAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGC 245507
| | | |||||||| || | | || || | ||||||||| |||| | || |
Sbjct 6785 CATGTAGTTGTACGTCTCCAGGACGCGC-TCCACGTTGTCGCCCCAGATCCCGACCGC-C 6842
Query 245508 AC-CTCATGAGGGTGTGCTGGGGCGTCT---CGATGGGTCCCTCGGGTCCCTTGAGCATG 245563
|| | ||||| ||||||||||| || |||| || | | | ||| |||| |
Sbjct 6843 ACGCGCATGATCATGTGCTGGGGCCGCTCAACGATCTTGCCGTTGAG---CTTAAGCAGG 6899
Query 245564 TAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611
|| || ||||| ||||||||||| |||||||| |||| ||||||
Sbjct 6900 TACGAACGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCG 6947
>seq1
Length=398088
Score = 230 bits (254), Expect = 4e-55
Identities = 369/523 (71%), Gaps = 23/523 (4%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC---GAGAGTCCCGACGCA 42689
|| |||||| |||||||| |||||||| || ||||||| || | || |
Sbjct 36582 CCTTGCATCCGCAAGAAGGCCGACTGGGCCCTTCGCTGGATCTCCGACAAG---GAGTCT 36638
Query 42690 ACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749
|| || | || | ||||| || || | ||||||||||||||||||||| |||||
Sbjct 36639 ACCTTTGCGCAGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCT 36698
Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809
||| | |||||||||||||| ||| || | ||||||||| || |||||||| |||
Sbjct 36699 TTCTCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAAC 36758
Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869
|| || ||| | |||||||| ||||| | ||||| |||||||| |||||||| |
Sbjct 36759 GAGCTGATCTCGCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTC---C 36815
Query 42870 CACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929
|| || | | || ||| ||| || | || ||||||| || ||||| ||
Sbjct 36816 CATCTGAAGAACCGCCCCAGCAAGAAGGTTATTGAGGACATCATCGTCGATGCCGTCAAG 36875
Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989
|||||| ||||||||||||| || | |||||| ||||| | |||||||| | ||||
Sbjct 36876 ATCGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAA-CTCGAC 36934
Query 42990 -CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAG 43048
|||||| ||||||| ||| || |||| ||| |||| | | | |||| |
Sbjct 36935 GCTCATGAAGCAGTACATTGAGTTTGTGGCCG---ATCGCCTG---CTGGTTTCTCTCGG 36988
Query 43049 C--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGA 43102
| || | | ||| | || |||||| ||||| |||||||||||||| |||
Sbjct 36989 CAACGACAAGGTGTACCGCTCGAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGG 37048
Query 43103 GGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||||||||||||| || |||||||| |||| ||||||||||
Sbjct 37049 CGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTACCAG 37091
Score = 131 bits (144), Expect = 3e-25
Identities = 237/341 (70%), Gaps = 17/341 (5%)
Strand=Plus/Plus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || ||| |||||| || |||||||| || |||
Sbjct 36190 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCTGAGGAGATCGATCTG 36249
Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415
||||||||| | || || ||| || | |||| || |||| ||| ||| |
Sbjct 36250 TCCAAGGACATGCACGACT-GGAACAACCGCCTGACCGATGACGAGCGGTTCTTCATATC 36308
Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475
|||| || |||||||||||||| || || ||||| ||||| |||||||||| | |
Sbjct 36309 CCACATCCTTGCCTTCTTCGCCGCGTCGGATGGCATTGTCAACGAGAACCTGGTCGAGCG 36368
Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
|||| ||||| ||| ||||| || || ||||||||||||||||| ||
Sbjct 36369 CTTCAGCGGCGAGGTCCAGGTTCCCGAGGCCCGTTGTTTCTACGGCTTCCAGATCATGAT 36428
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592
|||||| | ||||||||| ||| | ||||||| |||| |||||| |||
Sbjct 36429 GGAGAACATCCACTCTGAGACCTACTC---TCTGCTCATCGACACATACATCAAGGA--- 36482
Query 42593 CGTCG---AGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630
||| | |||| | |||||||| ||||| || ||||
Sbjct 36483 CGTGGAGCAGCGCACGTACCTGTTCAACGCCATTGACACGA 36523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944328528967040
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