Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq376 506 4e-138 seq1 230 4e-55 >seq376 Length=8930 Score = 506 bits (560), Expect = 4e-138 Identities = 1279/1908 (67%), Gaps = 95/1908 (5%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 |||| ||||||||| ||| |||| | || || | || | |||||||||||| |||||| Sbjct 5104 CCACCGTGAACTGGATCGGCTGCG-CTGCCGCTTGCGTGCGCAGGTAGTACATACCGGTC 5162 Query 243794 TTGAGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCT 243851 |||||||| ||| |||| | | |||||| || | ||| ||| || Sbjct 5163 TTGAGTCCCAACTT--CCAGCCCGTAAAATGCATGCTGGTAATCTTGCCCAT----AG-- 5214 Query 243852 TTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC- 243910 | ||| ||| || | |||||| ||||| |||||||| ||| | |||| Sbjct 5215 -TCGGTG-----CGCGCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAACG-CGCCA 5267 Query 243911 CGCTCTGCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGAT 243969 || || || ||||| | | || | ||| || ||||| || | |||||||| | Sbjct 5268 CGGTCGGCCGCCATCTGCACAATCGTGCG-CTGCGAGATCTCCCACACTGTCTTGTACAG 5326 Query 243970 GGGCTTGAGGTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCC--CTTGTGGACGA 244025 | ||||| | | |||| |||| |||||||| ||||| || | | || | | Sbjct 5327 CGCCTTGATTTCAGCCGGGATG--TTCGGGATGTTCTGGACCGACCCGCCCTCTGCA--A 5382 Query 244026 TGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGT 244085 ||| || | |||||| || ||||||||||| | | |||| ||| ||| Sbjct 5383 TGATGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTT---CAGAA 5439 Query 244086 GCCT---GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGC 244142 ||| ||| |||||||| ||||| || | |||||| ||||||||||||| |||| Sbjct 5440 GCCATGGGTTGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACG 5499 Query 244143 TGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGG 244202 || ||||||| || || |||||||||| ||||||| || || |||||||| | Sbjct 5500 TGTATGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCG 5559 Query 244203 GCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC 244262 ||| ||||| ||||||||| | |||||||||| || ||| ||| | ||| || || Sbjct 5560 GCGCCACCAACAGACTGTTGCGCACGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCC 5619 Query 244263 AGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCC 244322 ||||||||| | ||| ||| | |||| | ||||||| ||||||||||| | | Sbjct 5620 AGTCCCACAGGTCCG--------TCG-GCTTGACGTCCCACATATCAAACTGCAGGATGC 5670 Query 244323 CCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTAC 244382 ||| ||||| |||||||| |||| ||| || || ||| ||||| | | Sbjct 5671 CCTGCGACACGGGAGACCCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGC 5730 Query 244383 AGCTCTC-GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG 244441 | | | ||| || || |||| |||||| ||||| |||||| |||||| | || || Sbjct 5731 ATGACGCCGTC-AGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGC 5789 Query 244442 GCCTTGCCGCAGGTGAAGGGG-ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 |||| | || | || || || | || | || ||| | || |||| ||||| || Sbjct 5790 GCCTC-CGGCGACTCAAAAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGAC 5848 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG---CGCATGGCTTCGGGCACGGGGTA 244557 || | ||||| || | ||| ||| ||||| | ||| || || ||||| ||||| Sbjct 5849 ACCCACACCGATCGGCCGGTGACGCATGTTGCTGTTGCGC---GCCTCCGGCACAGGGTA 5905 Query 244558 AAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCC 244615 ||||| ||||||| | ||| |||||||| | || |||| ||| ||| Sbjct 5906 GTAGTTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTGCGT--GACCTCGTGA 5963 Query 244616 AGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG 244675 ||| ||| ||||||||| | || | |||| | ||| || || | Sbjct 5964 AGCTTCTGGAAGTCGTAC------GTCTCGTTGGCGTAG----TCCACAAAA-------G 6006 Query 244676 AGGGCGACGCTGGC-----CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGA 244730 | ||| ||| || ||||||||| || |||||||| || | | ||||| || Sbjct 6007 ACGGCAGCGCCAGCGACGACAGGTTGCACACCGCCACCTCATCGGGCGCGCAGTACTCGA 6066 Query 244731 CAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG 244790 |||||| ||||| ||||| || |||||||||||||| || || ||| |||| Sbjct 6067 TAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGC 6126 Query 244791 CGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850 ||||||| ||||||||| |||||||| || |||||||| ||| || | |||| Sbjct 6127 GGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGA 6186 Query 244851 CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 || | ||| || | | ||||||||||| | || | |||||| |||||| Sbjct 6187 CGGCATACCACAGCTTCTGGGCCTTGACCGTGCGACGGCCACGGCCCTCCTTCTCGTACT 6246 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970 ||||| ||||||||||||| ||| || ||| | || || |||||| | Sbjct 6247 TCTCGTACAAGGCCTCGAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGG 6306 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 ||||||| || |||| |||||| | || || | || |||||| ||||| ||||||| Sbjct 6307 GGCACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCC 6366 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 |||| ||| |||| ||||| | || | ||| ||| |||| |||||| | ||| | Sbjct 6367 AGAGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGT 6426 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 | | || || || ||||| | ||||| ||||||| ||||| || |||||| |||| Sbjct 6427 CGAGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCC 6486 Query 245151 GCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGC 245209 ||||||| || ||||||||||| | | || | |||||| | |||||| |||| Sbjct 6487 GCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTG-TTGTTGAACACGCGCAGCATAGGG 6545 Query 245210 ACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTG 245269 || |||||||| || ||||||||||| ||||| | ||| || | | || | | Sbjct 6546 ACAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGCGGATGCGG 6605 Query 245270 CTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTG 245329 || | ||| || | || || || ||||||||| | ||||| |||||| |||| Sbjct 6606 TGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTG 6665 Query 245330 TCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGG 245389 || |||||||| |||||||| |||||||| | ||| ||||| || | |||| | Sbjct 6666 TCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCT-G 6724 Query 245390 GGCTTGGGGC-TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 |||||||||| ||| | |||||| || ||||| ||||| || ||| | | | || Sbjct 6725 GGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGAACTTGTTGGA 6784 Query 245449 GAGGAACCCGTACGTCTGGAGCA-GAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGC 245507 | | | |||||||| || | | || || | ||||||||| |||| | || | Sbjct 6785 CATGTAGTTGTACGTCTCCAGGACGCGC-TCCACGTTGTCGCCCCAGATCCCGACCGC-C 6842 Query 245508 AC-CTCATGAGGGTGTGCTGGGGCGTCT---CGATGGGTCCCTCGGGTCCCTTGAGCATG 245563 || | ||||| ||||||||||| || |||| || | | | ||| |||| | Sbjct 6843 ACGCGCATGATCATGTGCTGGGGCCGCTCAACGATCTTGCCGTTGAG---CTTAAGCAGG 6899 Query 245564 TAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 || || ||||| ||||||||||| |||||||| |||| |||||| Sbjct 6900 TACGAACGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCG 6947 >seq1 Length=398088 Score = 230 bits (254), Expect = 4e-55 Identities = 369/523 (71%), Gaps = 23/523 (4%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC---GAGAGTCCCGACGCA 42689 || |||||| |||||||| |||||||| || ||||||| || | || | Sbjct 36582 CCTTGCATCCGCAAGAAGGCCGACTGGGCCCTTCGCTGGATCTCCGACAAG---GAGTCT 36638 Query 42690 ACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749 || || | || | ||||| || || | ||||||||||||||||||||| ||||| Sbjct 36639 ACCTTTGCGCAGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCT 36698 Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809 ||| | |||||||||||||| ||| || | ||||||||| || |||||||| ||| Sbjct 36699 TTCTCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAAC 36758 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 || || ||| | |||||||| ||||| | ||||| |||||||| |||||||| | Sbjct 36759 GAGCTGATCTCGCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTC---C 36815 Query 42870 CACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 || || | | || ||| ||| || | || ||||||| || ||||| || Sbjct 36816 CATCTGAAGAACCGCCCCAGCAAGAAGGTTATTGAGGACATCATCGTCGATGCCGTCAAG 36875 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 |||||| ||||||||||||| || | |||||| ||||| | |||||||| | |||| Sbjct 36876 ATCGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAA-CTCGAC 36934 Query 42990 -CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAG 43048 |||||| ||||||| ||| || |||| ||| |||| | | | |||| | Sbjct 36935 GCTCATGAAGCAGTACATTGAGTTTGTGGCCG---ATCGCCTG---CTGGTTTCTCTCGG 36988 Query 43049 C--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGA 43102 | || | | ||| | || |||||| ||||| |||||||||||||| ||| Sbjct 36989 CAACGACAAGGTGTACCGCTCGAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGG 37048 Query 43103 GGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| || |||||||| |||| |||||||||| Sbjct 37049 CGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTACCAG 37091 Score = 131 bits (144), Expect = 3e-25 Identities = 237/341 (70%), Gaps = 17/341 (5%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| || |||||||| || ||| Sbjct 36190 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCTGAGGAGATCGATCTG 36249 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||||| | || || ||| || | |||| || |||| ||| ||| | Sbjct 36250 TCCAAGGACATGCACGACT-GGAACAACCGCCTGACCGATGACGAGCGGTTCTTCATATC 36308 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||||||||| || || ||||| ||||| |||||||||| | | Sbjct 36309 CCACATCCTTGCCTTCTTCGCCGCGTCGGATGGCATTGTCAACGAGAACCTGGTCGAGCG 36368 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| ||||| || || ||||||||||||||||| || Sbjct 36369 CTTCAGCGGCGAGGTCCAGGTTCCCGAGGCCCGTTGTTTCTACGGCTTCCAGATCATGAT 36428 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||||||| ||| | ||||||| |||| |||||| ||| Sbjct 36429 GGAGAACATCCACTCTGAGACCTACTC---TCTGCTCATCGACACATACATCAAGGA--- 36482 Query 42593 CGTCG---AGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 ||| | |||| | |||||||| ||||| || |||| Sbjct 36483 CGTGGAGCAGCGCACGTACCTGTTCAACGCCATTGACACGA 36523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328528967040