Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq233 113 4e-20
seq204 100 2e-16
seq23 98.7 8e-16
seq34 82.4 6e-11
>seq233
Length=18884
Score = 113 bits (124), Expect = 4e-20
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||||||||||||||| || ||||||||||||||||| |||||||| || | |
Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| ||| |||| |||| |||||||| ||||| ||||| |||||||| ||| |||
Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468
Query 34021 ACGCTCTCTTTGTCC 34035
| | ||| ||||||
Sbjct 1469 ATCCCCTCCTTGTCC 1483
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| || |||||||||||||||||||||||||| || | |
Sbjct 1577 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1636
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| ||| | || |||| |||||||| || || ||||| |||||||| ||| |||
Sbjct 1637 AGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGG 1696
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 1697 ATGCCCTCCTTGTCC 1711
Score = 93.3 bits (102), Expect = 3e-14
Identities = 109/145 (75%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| || |||||||| || ||||| ||||||||| |||||||| || ||
Sbjct 2032 ACCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GC 2090
Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
| || || | || |||| |||||||| ||||| |||||||||||||| ||| ||
Sbjct 2091 TCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCG 2150
Query 34019 GCACGCTCTCTTTGTCCATAATTTT 34043
| | || ||| |||||| ||| ||
Sbjct 2151 GGATGCCCTCCTTGTCCTGAATCTT 2175
Score = 91.5 bits (100), Expect = 1e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| || ||||| |||||||||||||||||| || ||
Sbjct 1805 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 1863
Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| || || |||| |||| |||||||| ||||| || ||||||||||| ||| |||
Sbjct 1864 CAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGG 1923
Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043
| || ||| || ||| ||| ||
Sbjct 1924 GATGCCCTCCTTATCCTGAATCTT 1947
>seq204
Length=21219
Score = 100 bits (110), Expect = 2e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| ||||||||||| || ||||||||||||||||| |||||||| || |
Sbjct 5911 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 5852
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || |||| || | ||||||||||| || |||||||||||||| || |||
Sbjct 5851 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 5792
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 5791 ATGCCCTCCTTGTCC 5777
>seq23
Length=165582
Score = 98.7 bits (108), Expect = 8e-16
Identities = 109/144 (76%), Gaps = 1/144 (1%)
Strand=Plus/Minus
Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951
|||| || ||| || | ||| ||||||||||| || || || ||||||||| ||||||
Sbjct 62229 CAAT-GATACCACCGCGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTG 62171
Query 33952 TAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGA 34011
|| || | || || |||| |||| |||||||| ||||| ||||||||||||||
Sbjct 62170 TAGTCGGACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGG 62111
Query 34012 TCCACCGGCACGCTCTCTTTGTCC 34035
||| ||| | || ||| ||||||
Sbjct 62110 TCCGGCGGGATGCCCTCCTTGTCC 62087
>seq34
Length=160120
Score = 82.4 bits (90), Expect = 6e-11
Identities = 117/165 (71%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 40050 GCGCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGAT 40109
||||| || ||||| || || | ||||||| ||| ||| ||||||||||| ||
Sbjct 15638 GCGCCGCGCTCCGGCCTCGCCGTCAAGCACGCCATCAACACCGGCGCCGGCGTCATCGAC 15579
Query 40110 TCTGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTG 40169
| |||||| ||| |||| |||| || || | ||| |||| |||| | |||||
Sbjct 15578 GCCGACTACCGCGGCCACGTCCGCGTCCTGCTGTTCAACCACGGCGACGCCGACTTTGCC 15519
Query 40170 GTGCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAGCGAATC 40214
|| | || |||||||||||||||||| | || ||||| |||
Sbjct 15518 GTCGCGCCCGGCGACCGCATCGCCCAGCTCGTGCTCGAGCGCATC 15474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397058025365008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |