Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq233 113 4e-20 seq204 100 2e-16 seq23 98.7 8e-16 seq34 82.4 6e-11 >seq233 Length=18884 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||||||||||||||| || ||||||||||||||||| |||||||| || | | Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| |||| |||||||| ||||| ||||| |||||||| ||| ||| Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 1469 ATCCCCTCCTTGTCC 1483 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || |||||||||||||||||||||||||| || | | Sbjct 1577 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1636 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || |||| |||||||| || || ||||| |||||||| ||| ||| Sbjct 1637 AGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGG 1696 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1697 ATGCCCTCCTTGTCC 1711 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||| ||||||||| |||||||| || || Sbjct 2032 ACCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GC 2090 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || | || |||| |||||||| ||||| |||||||||||||| ||| || Sbjct 2091 TCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCG 2150 Query 34019 GCACGCTCTCTTTGTCCATAATTTT 34043 | | || ||| |||||| ||| || Sbjct 2151 GGATGCCCTCCTTGTCCTGAATCTT 2175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || ||||| |||||||||||||||||| || || Sbjct 1805 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 1863 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| |||||||| ||||| || ||||||||||| ||| ||| Sbjct 1864 CAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGG 1923 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| || ||| ||| || Sbjct 1924 GATGCCCTCCTTATCCTGAATCTT 1947 >seq204 Length=21219 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||||||||||||||| |||||||| || | Sbjct 5911 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 5852 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || |||||||||||||| || ||| Sbjct 5851 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 5792 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 5791 ATGCCCTCCTTGTCC 5777 >seq23 Length=165582 Score = 98.7 bits (108), Expect = 8e-16 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||| || | ||| ||||||||||| || || || ||||||||| |||||| Sbjct 62229 CAAT-GATACCACCGCGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTG 62171 Query 33952 TAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGA 34011 || || | || || |||| |||| |||||||| ||||| |||||||||||||| Sbjct 62170 TAGTCGGACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGG 62111 Query 34012 TCCACCGGCACGCTCTCTTTGTCC 34035 ||| ||| | || ||| |||||| Sbjct 62110 TCCGGCGGGATGCCCTCCTTGTCC 62087 >seq34 Length=160120 Score = 82.4 bits (90), Expect = 6e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 40050 GCGCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGAT 40109 ||||| || ||||| || || | ||||||| ||| ||| ||||||||||| || Sbjct 15638 GCGCCGCGCTCCGGCCTCGCCGTCAAGCACGCCATCAACACCGGCGCCGGCGTCATCGAC 15579 Query 40110 TCTGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTG 40169 | |||||| ||| |||| |||| || || | ||| |||| |||| | ||||| Sbjct 15578 GCCGACTACCGCGGCCACGTCCGCGTCCTGCTGTTCAACCACGGCGACGCCGACTTTGCC 15519 Query 40170 GTGCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAGCGAATC 40214 || | || |||||||||||||||||| | || ||||| ||| Sbjct 15518 GTCGCGCCCGGCGACCGCATCGCCCAGCTCGTGCTCGAGCGCATC 15474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058025365008