Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq233 150 2e-31 seq204 129 6e-25 seq23 104 3e-17 >seq233 Length=18884 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| |||| ||||||||||| ||||| ||||| || | ||| |||||| | Sbjct 1588 ACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCC 1647 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || || ||||||||||| | || | || |||||| Sbjct 1648 ATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTT 1707 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || |||| ||| | | | ||||||||| ||||| |||| ||| | Sbjct 1708 GTCCTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAA 1766 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| || ||||| |||||||| ||||| Sbjct 1767 TCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803 Score = 140 bits (154), Expect = 4e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||||||||||| || || ||||| || | ||| |||||| || Sbjct 1361 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCG 1420 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || || || ||||||||||| | || | | ||||||| Sbjct 1421 TCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTG 1480 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || |||| ||| | | | ||||||||| ||||| |||| ||| || Sbjct 1481 TCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAAT 1539 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || ||||| || ||||| ||||| Sbjct 1540 CGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575 Score = 118 bits (130), Expect = 1e-21 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| |||| || |||||| ||||| ||||| || ||| || || | Sbjct 1816 ACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACC 1875 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || ||||| ||||||||||| | || | || |||||| Sbjct 1876 GTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 1935 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 ||| ||| | || | |||| ||| | | | |||||| ||| ||||| || | ||| Sbjct 1936 ATCC-TGAATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTG 1993 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || |||||||| || ||||||||||| Sbjct 1994 ATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031 Score = 107 bits (118), Expect = 2e-18 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || ||| || || | || || Sbjct 2050 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 2109 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || || || || || ||||||||||| | || | || |||||||||| | Sbjct 2110 CAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-T 2168 Query 42119 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 42176 || | || | |||| ||| | | | |||||| ||| ||||| || | ||||| || Sbjct 2169 GAATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTC 2227 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || |||||||| || ||||||||||| Sbjct 2228 TTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259 >seq204 Length=21219 Score = 129 bits (142), Expect = 6e-25 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||||||||||| || || ||||| || | || || || || Sbjct 5899 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 5840 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||||| || | || ||||||| Sbjct 5839 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 5780 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTG 42170 ||| ||| || |||| | | | |||||| |||| ||||| || | ||| Sbjct 5779 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTC---TCCACCTCAAGGGTG 5723 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| |||||||| || ||||| || ||||| ||||| || Sbjct 5722 ATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682 >seq23 Length=165582 Score = 104 bits (114), Expect = 3e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || | ||| ||||| | Sbjct 62210 ACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCC 62151 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || || ||||||||||| | || | || |||||| Sbjct 62150 GTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 62091 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || |||| | | | |||||| || || || || | ||||| Sbjct 62090 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGAT 62031 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAA 42199 ||| |||||||| || ||||| || || Sbjct 62030 GGTCTTGCCCGTCAGGGTCTTCACGAA 62004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206661695360