Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq233 111 2e-19 seq204 100 3e-16 seq23 100 3e-16 >seq233 Length=18884 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || ||||||||||| || Sbjct 1805 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1864 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || ||||||||||| ||| | ||||| ||||||||||| || || Sbjct 1865 AGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGG 1924 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCA 64394 || || || || || || || || ||| || || | || | ||| || |||| Sbjct 1925 ATGCCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATCGTGT--CCGACGACTCCA 1982 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||||||||| | || || ||||| |||||||| Sbjct 1983 CCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||||| | ||||| || || | |||||| || || || |||||||| || Sbjct 2032 ACCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 2091 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||||||||| ||| | || || ||||||||||| || || Sbjct 2092 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGG 2151 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393 || || || || || || || || ||| || || | || | ||| || ||| Sbjct 2152 GATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATCGTGT--CCGACGACTCC 2209 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || | ||||||||||| | || || ||||| |||||||| Sbjct 2210 ACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||| || || || |||||||| || | | || ||| |||| Sbjct 1364 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCGTCC 1423 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||||||||||||| || || || || || || || Sbjct 1424 TCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCC 1483 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | | ||||| || | || | ||| Sbjct 1484 TGGATCTTCGACTTGACGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTC 1543 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 1544 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || ||||||||||| || | Sbjct 1577 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1636 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| | || || ||||||||||| || |||| |||||||||||||| || || Sbjct 1637 AGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGG 1696 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || || | | ||||| Sbjct 1697 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACC 1756 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || || || || ||||| Sbjct 1757 TCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803 >seq204 Length=21219 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | ||||| || || | ||| || || || |||||||| || | | Sbjct 5911 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 5852 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || || |||||||||||||| || Sbjct 5851 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 5792 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| || | || || | ||||| Sbjct 5791 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCACC 5732 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| || | || || ||||| || ||||| || Sbjct 5731 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682 >seq23 Length=165582 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| || || | ||||| || || || |||||||| || | Sbjct 62222 ACCACCGCGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 62163 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| || ||||||||||| ||| | || || ||||||||||| || || Sbjct 62162 CAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGG 62103 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || || || || || Sbjct 62102 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGAC 62043 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 || | ||| | ||||||||| |||| || || |||||| Sbjct 62042 CTCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 62003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639154013760