Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq376 389 4e-103
>seq376
Length=8930
Score = 389 bits (430), Expect = 4e-103
Identities = 1137/1724 (66%), Gaps = 52/1724 (3%)
Strand=Plus/Minus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||||| |||||| || |||||| |||||||| || ||| | | |||
Sbjct 6940 AACTACCAATACTTTGGCTTCAAGACGCTGGAGCGTTCGTACCTGCTTAAGCTCAACGGC 6881
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | | ||||| || || || || | |||||||| || ||||||| ||| ||
Sbjct 6880 AAGATCGTTGAGCGGCCCCAGCACATGATCATGCGCGTGGCGGTCGGGATCTGGGGCGAC 6821
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| || | || || | | | || ||||| ||||| | || ||
Sbjct 6820 AACGTGGAGCGCGTCCTGGAGACGTACAACTACATGTCCAACAAGTTCTTCACACACGCG 6761
Query 93895 ACCCCGACCCTGTTCAACGCGGGGAC-CCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953
| || || || |||||||| || || ||| ||| ||| | | ||||| |||||| |
Sbjct 6760 TCGCCCACGCTTTTCAACGCTGGCACGCCCCAAGCC-CAGCTCGCGTCGTGCTTCCTGGT 6702
Query 93954 -GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012
||| | |||| ||| ||| || || | ||||| ||||||| || || | |
Sbjct 6701 TGAC-ATGAAGGATGACAGCATTGAGGGCATCTACGACACCCTCAAGACTTGCGCTATGA 6643
Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072
|||| || ||||| || |||||||| | |||||| | | || |||| || || |
Sbjct 6642 TCTCCAAGACGGCGGGTGGCATCGGGATGAACGTCCACCGCATCCGCGCCACTGGCTCAT 6583
Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132
|||| ||| ||||| || || ||||||||| | ||||||||||| || || |||||||
Sbjct 6582 ACATTGCCGGCACCAACGGTACATCCAACGGCATTGTCCCTATGCTGCGCGTGTTCAACA 6523
Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192
|| |||| ||||| |||||||||||||| | | || || | ||| |||| |
Sbjct 6522 ACACGGCCCGCTATGTGGACCAGGGTGGAAACAAGCGGCCAGGCGCCTTCTGCATCTACC 6463
Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252
| ||||| ||||| || |||||| | ||| |||||||||| |||||||| ||||| |
Sbjct 6462 TGGAGCCGTGGCATGCTGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCATGGCAAGG 6403
Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312
| || | ||| | ||||| ||| || |||||| | || ||||| || ||||| |
Sbjct 6402 AGGAGGTACGCGCCCGCGACCTGTTCCTGGCGCTCTGGATCCCGGACCTGTTCATGAAGC 6343
Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372
| || ||||| ||| || ||||| || | || |||||||| || || || ||| |||
Sbjct 6342 GTGTGGAGAAGAACGGCGACTGGACGCTGATGTGCCCCAATGAGTGCCCGGGTCTGGCCG 6283
Query 94373 AC-GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGC 94430
|| | | | || | || || | |||||| | ||||| | |||| | |||
Sbjct 6282 ACTGCTACGGCGACGAG-TTCGAGGCCTTGTACGAGAAGTACGAGAAGGAGGGCCGTGGC 6224
Query 94431 C--AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488
| | | ||| | | || |||||||||| || || |||| | ||| ||||
Sbjct 6223 CGTCGCACGGTCA---AGGCCCAGAAGCTGTGGTATGCCGTCCTGGAGGCGCAGACGGAG 6167
Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547
|| || | || | ||| ||| |||||| | ||| |||| |||| ||||||| || |
Sbjct 6166 ACCGGCAACCCGTTCATGCTGTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAA 6108
Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607
||| || ||| ||||| || |||||||| |||||| ||||||| | || ||
Sbjct 6107 CCTGGGCACCATCCGCAGCTCCAACCTGTGCACAGAGATTATCGAGTACTGCGCGCCCGA 6048
Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667
||| | || ||||| |||||| || | ||| | |||| ||| | ||
Sbjct 6047 TGAGGTGGCGGTGTGCAACCTGTCGTCGCTGGCGCTGCCGTCTTTTGTG------GACT- 5995
Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT 94727
||| | || | ||| ||| | || ||||| | || | | ||| |||| |
Sbjct 5994 -ACGCCAAC-GAGACGTACGACTTCCAGAAGCTTCACGAGGTCAC--GCAGG-TGGTGGT 5940
Query 94728 G---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784
| ||||||||| | | |||||| |||| |||||| || ||||||||| |||
Sbjct 5939 GCGCAACCTGAACCGTATCATCGACGTCAACTACTACCCTGTGCCGGAGGCGCGCAACAG 5880
Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844
||| || || ||||| ||||| | || |||||||| || ||||| ||| | ||
Sbjct 5879 CAACATGCGTCACCGGCCGATCGGTGTGGGTGTCCAGGGCTTGGCGGATGCGTTCCTGGC 5820
Query 94845 GATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGT---TTGAATTTGAACATATTCGA 94901
| |||| |||| | || || | || | |||| || | || | | || || ||
Sbjct 5819 GCTGCGGATGCCTTTTGAGTC-GCCG--GAGGCGCGTGAGCTCAACAAGCAGATCTTTGA 5763
Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961
| || || ||| || ||| || | || |||| | ||| |||| |
Sbjct 5762 GACGATCTACCACGCTGCGCTGACGGCGTCATGCGACCTGGCGAAGCTGGAGGGCGTG-T 5704
Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021
|| ||| ||| | || || ||| || |||||||| | ||||| || | ||||
Sbjct 5703 ACTCGA--CGTACGAGGGGTCTCCCGTGTCGCAGGGCATCCTGCAGTTTGATATGTGGGA 5646
Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA---AACA 95078
|| ||||| ||| |||| |||||||| | || || || | | |||| | ||
Sbjct 5645 CGTCAAGCCGACGGACCTGTGGGACTGGGACTCGCTGCG-TCTCAAG--ATCAAGGAGCA 5589
Query 95079 CGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCT 95138
||| ||| ||| ||| | ||||| || ||||| ||||| || || ||||||||||
Sbjct 5588 CGGCGTGCGCAACAGTCTGTTGGTGGCGCCGATGCCGACGGCATCGACCTCGCAGATCCT 5529
Query 95139 TGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGC 95198
||||||||||| | ||||| || | ||| |||||| | ||| | | || ||||| ||
Sbjct 5528 GGGCAACAACGAATGCTTCGAGCCATACACGTCCAACATCTACCAGCGCCGTGTGCTGGC 5469
Query 95199 CGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTG 95258
|| || |||| || ||||| || || ||||||| | |||| ||||
Sbjct 5468 AGGCGAGTTCCAGGTGGTCAACCCATGGCTTCTGAAGGACCTGGTGGACATGGGCCTGTG 5409
Query 95259 GGGTGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314
| ||||| | ||||||| | ||| | | ||| || |||||||||||||
Sbjct 5408 GTCGGACAACATGAAGAACCGCATCATTGCAGAGGG----CGGGTCGGTCCAGAACATCC 5353
Query 95315 CGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCG 95374
|| | || |||| || ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 5352 CGAACATCCCGGCTGAAATCAAGGCGCTGTACAAGACAGTGTGGGAGATCTCGCAGCGCA 5293
Query 95375 TGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418
||| | | ||||||| ||| || | |||||| ||||
Sbjct 5292 CGATTGTGCAGATGGCGGCCGACCGTGGCGCGTTCATCGACCAG 5249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494717609627840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |