Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq376 250 2e-61 seq1 140 3e-28 seq233 100 3e-16 >seq376 Length=8930 Score = 250 bits (276), Expect = 2e-61 Identities = 940/1454 (65%), Gaps = 59/1454 (4%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||||||||| || |||||||| |||| ||| || | | || | ||| ||| | | Sbjct 5446 GGTTGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATG 5505 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| ||||||| ||||| || || || | || | ||| |||||||| ||||| Sbjct 5506 GCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCA 5565 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 |||||| | || |||| ||||||| | || | | || || | ||| |||| Sbjct 5566 CCAACAGACTGTTGCGCACGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCCAGTCCC 5625 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT--CGACTGGCGGG 153265 |||| ||| ||| | ||| |||||| || |||| | | || |||| | | | Sbjct 5626 ACAGGTCCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAG 5685 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAG 153325 || || | |||| ||| ||| || | | ||||| ||||| ||| || Sbjct 5686 AC--CCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGCATGACGCCGTCAG 5743 Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385 ||| | | ||| || || || ||| || || ||||| | ||| || ||| Sbjct 5744 CGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGCGCCTCCGGCGACTC 5803 Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445 | ||||| |||||| || || || || |||| ||||||| ||| || ||||| || Sbjct 5804 AAAAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGG 5863 Query 153446 TCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAAT 153505 || || | ||||||| | ||| || | || |||| ||| ||||| || Sbjct 5864 CCGGTGACGCATGTTGCTGTTGCGCGCCTCCGGCACAGGGTAGTAGTTGACGTCGATGAT 5923 Query 153506 TTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGT 153565 ||| ||||||||||||||||| | || | | | | ||| |||| ||| || || || Sbjct 5924 ACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGTCGTACGT 5983 Query 153566 CATTTCGTCGACGCGTACGCATCGATTCACGGCA-----ATAGACGCCAGATTACAGACG 153620 | |||| | ||||| | | | |||||| | |||| ||| || || || Sbjct 5984 C---TCGTTG--GCGTAGTCCACAAAAGACGGCAGCGCCAGCGACGACAGGTTGCACACC 6038 Query 153621 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATG 153680 ||| ||| |||| ||| ||||| | ||||| | ||| |||||| || ||| Sbjct 6039 GCCACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAGCTGCGGATG 6098 Query 153681 ACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 153740 ||||| || | ||| ||||| ||||| ||||| ||| ||| | |||||| |||| Sbjct 6099 GTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGG 6158 Query 153741 CCGCCGGTCTCGACTTGCGTTTC---GACGATAAACCTATGCAGGTCCTGCGCTCGCACC 153797 ||||||||| |||| || |||| | ||| ||| | ||| || ||| Sbjct 6159 TTGCCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCA---CAGCTTCTGGGCCTTGACC 6215 Query 153798 CGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCG 153857 | || |||||||| ||||||| |||||||| ||| |||||||||||| Sbjct 6216 GTGCGACGGCCACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCG 6275 Query 153858 TAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCG 153917 ||||||||||| || || || |||| || || |||||||||| ||| |||| || Sbjct 6276 TAGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCCA------GTCGCCG 6329 Query 153918 TT------GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 || || || ||||||||| ||||| | ||||||||| | |||||||| Sbjct 6330 TTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGG 6389 Query 153972 GC-CTTGCAATCCTCCGCGCCCATG----TTGCGTTTCAGATTGA-GCACGCTATAGATG 154025 || | | | |||||| | ||||| ||||| ||| | || | || | | | | | Sbjct 6390 GCGCGTAC-CTCCTCCTTG-CCATGGTTCTTGCG---CAGGTCGAGGAACTCGA-ACACG 6443 Query 154026 TCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGA 154082 || || ||||| || || | ||||| | | ||| ||| ||| ||||| ||||| Sbjct 6444 TCAGCATGCCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTTGTTTCCACCCTGG 6503 Query 154083 TCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTG 154142 || || | ||| || | |||||||| ||||||| ||| || | | |||| | | || Sbjct 6504 TCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTA 6563 Query 154143 CCGTTGGT--CG--AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCC 154198 |||||||| || ||| || ||| |||||| | | || ||||| | || Sbjct 6564 CCGTTGGTGCCGGCAATGTAT----GAGCCAGTGGCGCGGATGCGGTGGACGTTCATCCC 6619 Query 154199 AATGCC-GCCGCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCG 154256 ||||| ||||||| ||| || || ||||| |||| || || ||||||||| Sbjct 6620 GATGCCACCCGCCGT-CTTGGAGATCATAGCGCAAGTC-TTGAGGGTGTCGTAGATGCCC 6677 Query 154257 TCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTT 154316 || ||||| || || | | | | || ||| ||||| | || | | |||| Sbjct 6678 TCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCTGGGCTTGGGGCGTG 6737 Query 154317 CCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTAC 154376 || || || || ||||| |||||| || || | || | | ||| | |||| Sbjct 6738 CCAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTAC 6797 Query 154377 GTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATG 154436 || || | | || || | | ||||| || |||| ||| |||||||||| |||| Sbjct 6798 GTCTCCAGGACGCGCTCCACGTTGTCGCCCCAGATCCCGACCGCCACGCGCATGATCATG 6857 Query 154437 TGCTGCGGACGTTC 154450 ||||| || || || Sbjct 6858 TGCTGGGGCCGCTC 6871 >seq1 Length=398088 Score = 140 bits (154), Expect = 3e-28 Identities = 306/455 (67%), Gaps = 29/455 (6%) Strand=Plus/Plus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCG-CC 52454 |||| |||| || ||||| ||||||||| | || || |||| ||||| || || Sbjct 36649 AGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC-GCTTTCTCGTCC 36707 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||| | | || | | ||| | |||||||||||||| ||| ||||||| |||| Sbjct 36708 ATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATC 36767 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTAC------AAGACG 52565 ||||| ||||| || |||||||| ||||| || ||||| | || | |||| Sbjct 36768 TCGCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCATCTGAAGAAC 36827 Query 52566 CGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCT 52625 ||| | | | || | | ||||| ||| | || || || Sbjct 36828 CGCCCCAGCAAGAAGGTTATTGAGGACATCATCGTC------------GATGCCGTCAAG 36875 Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||| ||||||| | || | || ||||| || ||||||||||||||| || | Sbjct 36876 ATCGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACTCGACG 36935 Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCC 52744 |||| ||||||| ||||||||||| ||||| ||| |||| ||||| | | | Sbjct 36936 CTCATGAAGCAGTACATTGAGTTTGTGGCCGATCGCCTGCTGGTTTCTCTCGGCAACGAC 36995 Query 52745 AAAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 || || | |||||| ||| || ||||| || ||| | ||||| || || | ||| Sbjct 36996 AAGGTGT---ACCGCTCGAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGC 37052 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| || |||||||| |||||||| || Sbjct 37053 AAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTA 37087 >seq233 Length=18884 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||||| || || |||||| || || || || | | Sbjct 1838 GACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCA 1897 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| |||||||| || || || || || || ||| | || | || | Sbjct 1898 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATC-CTGAATCTTCGACTTGAC 1956 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | |||||||||||| | || | ||| || || || || || | Sbjct 1957 GTTG-TCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCT 2015 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 2016 TGACGAAGATTTGCAT 2031 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || ||||| || || || || | | Sbjct 2066 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCA 2125 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| |||||||| || || || || ||||| ||| | || | || | Sbjct 2126 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTGAC 2184 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | |||||||||||| | || | ||| || || || || || | Sbjct 2185 GTTG-TCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCT 2243 Query 138599 TTACAAAAATCTGCATG 138615 | || || || |||||| Sbjct 2244 TGACGAAGATTTGCATG 2260 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || ||||||||||| || || ||| |||||| || || || || | | | Sbjct 1384 CTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAA 1443 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 1444 GATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 1503 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | ||||||||||| ||| | ||| || || ||||| || || || Sbjct 1504 GTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGAC 1563 Query 138603 AAAAATCTGCATG 138615 || ||||||||| Sbjct 1564 GAAGATCTGCATG 1576 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| || || ||| ||||| || || || || | | Sbjct 1612 CTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAA 1671 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 1672 AATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 1731 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | ||||||||||| ||| | ||| || || ||||| || || || Sbjct 1732 GTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGAC 1791 Query 138603 AAAAATCTGCATG 138615 ||| ||||||||| Sbjct 1792 AAAGATCTGCATG 1804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256792234880