Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 3e-28
seq233 136 4e-27
seq376 132 5e-26
seq204 109 5e-19
seq23 98.7 9e-16
>seq1
Length=398088
Score = 140 bits (154), Expect = 3e-28
Identities = 305/448 (68%), Gaps = 19/448 (4%)
Strand=Plus/Plus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTG-CGGCGAT 47197
||| || |||| ||||| |||||||||| |||||||| ||| ||||| || | ||
Sbjct 36651 CGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC-GCTTTCTCGTCCAT 36709
Query 47198 ATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTC 47257
|| | |||| | || | ||||||||||| || || ||||||||| |||||
Sbjct 36710 CTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTC 36769
Query 47258 GAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTACAA-CACTAGAGTCG 47313
| | ||||| |||||||||||| |||| ||||| || | || | | | ||| ||
Sbjct 36770 GCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCATCTGAAGAACCG 36829
Query 47314 ATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGA 47371
| | ||| || | | || ||||| | | ||| |||||| || ||
Sbjct 36830 CCCCAGCAAGAAGGTTAT--------TGAG-GACATCATCGTCGATGCCGTCAAGATCGA 36880
Query 47372 GATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGAT 47431
| |||||| || |||||||||||||| | | |||| |||||| || | | ||
Sbjct 36881 GCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACTCGACGCTCAT 36940
Query 47432 GAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGAT 47491
|| ||||||| || ||||| ||||| |||||||| ||| || | |||| |
Sbjct 36941 GAAGCAGTACATTGAGTTTGTGGCCGATCGCCTGCTGGTTTCTCTCGGCAACGACAAGGT 37000
Query 47492 TTACCACACCGAG-AATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550
|||| | |||| || || || || || ||| | ||||| || || | ||||||||||
Sbjct 37001 GTACCGC-TCGAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCA 37059
Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| || |||||||| |||||||| ||
Sbjct 37060 ACTTCTTTGAGAAGCGTGTCGGCGACTA 37087
>seq233
Length=18884
Score = 136 bits (150), Expect = 4e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | ||| ||| || ||||| ||||| ||| |
Sbjct 1577 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1636
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || ||| || ||||| || || ||| | |||| |||||||| || || ||
Sbjct 1637 AGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGG 1696
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| ||| ||||| |||| |||| ||||| | ||||| ||
Sbjct 1697 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATCGTGTCGCTGCTCTCCAC 1755
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||| || | ||| ||||| ||||| || || ||||| |||||||||
Sbjct 1756 CTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATG 1804
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | || | ||||| || | ||| ||||| || || || ||||| |||| |
Sbjct 2033 CCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 2092
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || ||||| || || || |||||| |||||||| || || ||
Sbjct 2093 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 2152
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || ||| ||||| |||| |||| ||||||| ||| ||
Sbjct 2153 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCGATCGTGTCCGACGACTCCAC 2211
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | ||| |||||||| || || || || || || ||||||
Sbjct 2212 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCATG 2260
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | ||| ||||| || ||||| ||||| |||| |
Sbjct 1805 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1864
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || || |||| | |||||||| || || ||
Sbjct 1865 AGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGG 1924
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||| ||| || ||| ||||| |||| |||| ||||||| ||| ||
Sbjct 1925 ATGCCCTCCTTATCCTGAATCTTCGACTTGACGTTG-TCGATCGTGTCCGACGACTCCAC 1983
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | ||| |||||||| || || || || || || |||||
Sbjct 1984 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
Score = 113 bits (124), Expect = 4e-20
Identities = 169/236 (72%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
|||||| ||||| || | |||| ||||| || | ||| ||| || || || |||||
Sbjct 1343 TACTGC-CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTA 1401
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
|| || ||| || || || ||||| || || || |||||| |||||||| ||
Sbjct 1402 GTCCGACAGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTC 1461
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058
|| || || |||||||||||| ||| ||| ||||| |||| || | ||||| | |
Sbjct 1462 CGGCGGGATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCAATCGTGTCGCTGC 1520
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||| || |||| || | ||| ||||| ||||| || || || || |||||||||
Sbjct 1521 TCTCCACCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1576
>seq376
Length=8930
Score = 132 bits (146), Expect = 5e-26
Identities = 985/1556 (63%), Gaps = 64/1556 (4%)
Strand=Plus/Plus
Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093
|| ||| || ||| |||| | || | ||||||||||||| |||||||| || || ||
Sbjct 5417 CATGTCCACCAGGTCCTTCAGAAGCCATGGGTTGACCACCTGGAACTCGCCTGCCAGCAC 5476
Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153
|| | | | || | |||| ||| | |||||||| | |||||||| || || |||||
Sbjct 5477 ACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGAAGCATTCGTTGTTGCCCAGGATCTG 5536
Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212
|| |||| || || ||||| |||||||| || | ||| | ||||||||| || ||
Sbjct 5537 CGAGGTCGATGCCGTCGGCATCGGCGCCACCAACAGACTGTTGCGCACGCCGTGCTCCTT 5596
Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272
| ||||| || || | ||| | ||||| | ||||| || | || | |
Sbjct 5597 G-ATCTTGAGACGCAGCGAGTCCCAGTCCCACA---GGTCCGTCGGCTTGACGTCCCACA 5652
Query 146273 TGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGT 146332
| || | |||| |||| | ||| ||| |||||||| || || |
Sbjct 5653 TATCAAACTGCAGGATGCCCTGCGACACGGGAGACCCCTCGTACGTCGAGTACACGCCCT 5712
Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392
| | ||| ||||| ||||| || ||| || | ||| || ||||| ||||
Sbjct 5713 CCAGCTTCGCCAGGTCGCATGACGCCGTCAGCGCAGCGTGGTAGATCGTCTCAAAGATCT 5772
Query 146393 TGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCG 146451
| ||||| |||| | |||||| || | || || || || || ||
Sbjct 5773 GCTTGTTGA-GCTCACGCGCCTCCGGCGACTCAAAAGGCATCCGCAGCGCCAGGAACGCA 5831
Query 146452 TCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCAGC 146510
|| || | ||||| | || ||||| | || ||||| | |||| ||||| ||| |
Sbjct 5832 TCCGCCAAGCCCTGGACACCCACACCGATCGGCCGGTGACGCATGTTGCTGTTGCGCGCC 5891
Query 146511 GCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTT 146570
|| ||| ||| |||| |||| ||||||||| ||| || || ||||| || | |
Sbjct 5892 TCCGGCACAGGG-TAGTAGTTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTG 5950
Query 146571 CGT---CAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTG-ACGCACT 146626
||| | || | | ||| |||| | || | || ||| | | ||
Sbjct 5951 CGTGACCTCGTGAAGCTTCTGGA---AGTCGTACGTCT---CGTTGGCGTAGTCCACAAA 6004
Query 146627 TGTTGACGGCG--ATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTG 146684
| | | ||| | || | || ||| || || || ||| || |||| ||||
Sbjct 6005 AGACGGCAGCGCCAGCGACGACAGGTTGCACACCGCCACCTCATCGGGCGCGCAGTACTC 6064
Query 146685 CACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAA 146744
| |||||| | ||| |||||| || |||| |||||| || || ||||| ||
Sbjct 6065 GATAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCT--- 6121
Query 146745 CTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTC 146801
||| ||||||| |||||||||| |||||| |||| ||||| || | | |||
Sbjct 6122 CTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTCTGCGCCTC 6181
Query 146802 GACGATGAATCTAAACAAATC-TCT-GGCCTTTACTTGTCTTTCGTACA-GTTTATTCTT 146858
| || | | | || | | ||| |||||| || || || || | | |||
Sbjct 6182 CAGGACG--GCATACCACAGCTTCTGGGCCTTGAC-CGTGCGACGGCCACGGCCCTCCTT 6238
Query 146859 TTCGTATTTCTCGTACAATATTTCAAAACTAG-AACCGTACTCGTCGAGGAGGCCGGGAT 146917
||||| ||||||||||| || |||| | ||||| |||| || || ||
Sbjct 6239 CTCGTACTTCTCGTACAAGGCCTC-GAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGC 6297
Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAAT 146977
||| ||||| || | ||||| ||| || |||| || ||| || | ||| |||| |
Sbjct 6298 ACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGT 6357
Query 146978 CGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGC 147037
| || ||||| || |||| | || |||||| || | ||||| | ||||| | |
Sbjct 6358 CCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTG-CCATGGTTC 6416
Query 147038 GT-CTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGT 147096
| | || || ||||| ||| | | || | |||||| ||||||| ||| | ||
Sbjct 6417 TTGCGCAGGTCGAGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGATGCAGAAG 6476
Query 147097 GCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGT 147153
|||||| ||| || || ||||| || || | ||| || |||| ||||| || ||
Sbjct 6477 GCGCCTGGCCGCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGC 6536
Query 147154 AACATGGACACGAGGCCGCCGGATTT---TGTGGTGCCG---TTGTAT-------TGAGC 147200
| ||| | || | |||| |||| | |||||||| ||||| || ||
Sbjct 6537 AGCATAGGGACAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTG-GC 6595
Query 147201 GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCG-GACT 147259
|| || || || ||| ||| ||||| || || || || || |||| |||| | |
Sbjct 6596 GCGGATGCGGTGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGT 6655
Query 147260 CGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACG 147319
| || | ||| | ||||||||| || |||||||| ||||| ||| |||||| ||||
Sbjct 6656 CTTG-AGGGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACG 6714
Query 147320 AACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGT---GA 147376
| | |||| | |||||| || || |||||||| ||||| || ||
Sbjct 6715 ACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGA 6774
Query 147377 ACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAA 147436
|| || || ||| | | ||||| || | | ||| | |||| ||||| |
Sbjct 6775 ACTTG-TTGGA--CATGTAGTTGTACGTCTCCAGGACGCGCTCCACGTTGTCGCCCCAGA 6831
Query 147437 TGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTT 147496
| | | || |||||||||| |||||||||||| || || | ||| | | |||| |
Sbjct 6832 TCCCGACCGCCACGCGCATGATCATGTGCTGGGGCCGCTCAACGATCTTGCCGTTGAGCT 6891
Query 147497 TTAATAGATATCCATTGGT-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTC 147551
| | || || | | | | ||| || ||||| |||||||| | ||||| | ||||
Sbjct 6892 TAAGCAGGTA-CGAACGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 6946
>seq204
Length=21219
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||||| || | ||| ||| || || || ||||| ||| | |||||
Sbjct 5899 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 5840
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||||| |||||||| ||||| || ||||||||||||
Sbjct 5839 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 5780
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||||| | |||| ||||||| ||||| || || | ||| |
Sbjct 5779 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTGATG 5720
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| || || || || || || ||||||||
Sbjct 5719 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 5685
>seq23
Length=165582
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | |||| ||||| || | || ||||| || || || ||||| ||| |
Sbjct 62221 CCACCGCGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 62162
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || || |||||| |||||||| || || ||
Sbjct 62161 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 62102
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| ||||||| ||||||
Sbjct 62101 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 62042
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| | || | || ||||| ||||| || || || |||
Sbjct 62041 TCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 62003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475495426840960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |