Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 seq233 136 4e-27 seq376 132 5e-26 seq204 109 5e-19 seq23 98.7 9e-16 >seq1 Length=398088 Score = 140 bits (154), Expect = 3e-28 Identities = 305/448 (68%), Gaps = 19/448 (4%) Strand=Plus/Plus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTG-CGGCGAT 47197 ||| || |||| ||||| |||||||||| |||||||| ||| ||||| || | || Sbjct 36651 CGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC-GCTTTCTCGTCCAT 36709 Query 47198 ATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTC 47257 || | |||| | || | ||||||||||| || || ||||||||| ||||| Sbjct 36710 CTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTC 36769 Query 47258 GAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTACAA-CACTAGAGTCG 47313 | | ||||| |||||||||||| |||| ||||| || | || | | | ||| || Sbjct 36770 GCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCATCTGAAGAACCG 36829 Query 47314 ATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGA 47371 | | ||| || | | || ||||| | | ||| |||||| || || Sbjct 36830 CCCCAGCAAGAAGGTTAT--------TGAG-GACATCATCGTCGATGCCGTCAAGATCGA 36880 Query 47372 GATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGAT 47431 | |||||| || |||||||||||||| | | |||| |||||| || | | || Sbjct 36881 GCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACTCGACGCTCAT 36940 Query 47432 GAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGAT 47491 || ||||||| || ||||| ||||| |||||||| ||| || | |||| | Sbjct 36941 GAAGCAGTACATTGAGTTTGTGGCCGATCGCCTGCTGGTTTCTCTCGGCAACGACAAGGT 37000 Query 47492 TTACCACACCGAG-AATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550 |||| | |||| || || || || || ||| | ||||| || || | |||||||||| Sbjct 37001 GTACCGC-TCGAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCA 37059 Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| || |||||||| |||||||| || Sbjct 37060 ACTTCTTTGAGAAGCGTGTCGGCGACTA 37087 >seq233 Length=18884 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||| || ||||| ||||| ||| | Sbjct 1577 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1636 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || || ||| | |||| |||||||| || || || Sbjct 1637 AGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGG 1696 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| ||||| |||| |||| ||||| | ||||| || Sbjct 1697 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATCGTGTCGCTGCTCTCCAC 1755 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||| ||||| ||||| || || ||||| ||||||||| Sbjct 1756 CTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATG 1804 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| || | ||| ||||| || || || ||||| |||| | Sbjct 2033 CCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 2092 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || || |||||| |||||||| || || || Sbjct 2093 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 2152 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || ||| ||||| |||| |||| ||||||| ||| || Sbjct 2153 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCGATCGTGTCCGACGACTCCAC 2211 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||| |||||||| || || || || || || |||||| Sbjct 2212 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCATG 2260 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| ||||| |||| | Sbjct 1805 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1864 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||| | |||||||| || || || Sbjct 1865 AGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGG 1924 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| || ||| ||||| |||| |||| ||||||| ||| || Sbjct 1925 ATGCCCTCCTTATCCTGAATCTTCGACTTGACGTTG-TCGATCGTGTCCGACGACTCCAC 1983 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| |||||||| || || || || || || ||||| Sbjct 1984 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031 Score = 113 bits (124), Expect = 4e-20 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||||| ||||| || | |||| ||||| || | ||| ||| || || || ||||| Sbjct 1343 TACTGC-CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTA 1401 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || || ||| || || || ||||| || || || |||||| |||||||| || Sbjct 1402 GTCCGACAGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTC 1461 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || |||||||||||| ||| ||| ||||| |||| || | ||||| | | Sbjct 1462 CGGCGGGATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCAATCGTGTCGCTGC 1520 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || |||| || | ||| ||||| ||||| || || || || ||||||||| Sbjct 1521 TCTCCACCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1576 >seq376 Length=8930 Score = 132 bits (146), Expect = 5e-26 Identities = 985/1556 (63%), Gaps = 64/1556 (4%) Strand=Plus/Plus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| || ||| |||| | || | ||||||||||||| |||||||| || || || Sbjct 5417 CATGTCCACCAGGTCCTTCAGAAGCCATGGGTTGACCACCTGGAACTCGCCTGCCAGCAC 5476 Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153 || | | | || | |||| ||| | |||||||| | |||||||| || || ||||| Sbjct 5477 ACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGAAGCATTCGTTGTTGCCCAGGATCTG 5536 Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212 || |||| || || ||||| |||||||| || | ||| | ||||||||| || || Sbjct 5537 CGAGGTCGATGCCGTCGGCATCGGCGCCACCAACAGACTGTTGCGCACGCCGTGCTCCTT 5596 Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272 | ||||| || || | ||| | ||||| | ||||| || | || | | Sbjct 5597 G-ATCTTGAGACGCAGCGAGTCCCAGTCCCACA---GGTCCGTCGGCTTGACGTCCCACA 5652 Query 146273 TGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGT 146332 | || | |||| |||| | ||| ||| |||||||| || || | Sbjct 5653 TATCAAACTGCAGGATGCCCTGCGACACGGGAGACCCCTCGTACGTCGAGTACACGCCCT 5712 Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392 | | ||| ||||| ||||| || ||| || | ||| || ||||| |||| Sbjct 5713 CCAGCTTCGCCAGGTCGCATGACGCCGTCAGCGCAGCGTGGTAGATCGTCTCAAAGATCT 5772 Query 146393 TGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCG 146451 | ||||| |||| | |||||| || | || || || || || || Sbjct 5773 GCTTGTTGA-GCTCACGCGCCTCCGGCGACTCAAAAGGCATCCGCAGCGCCAGGAACGCA 5831 Query 146452 TCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCAGC 146510 || || | ||||| | || ||||| | || ||||| | |||| ||||| ||| | Sbjct 5832 TCCGCCAAGCCCTGGACACCCACACCGATCGGCCGGTGACGCATGTTGCTGTTGCGCGCC 5891 Query 146511 GCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTT 146570 || ||| ||| |||| |||| ||||||||| ||| || || ||||| || | | Sbjct 5892 TCCGGCACAGGG-TAGTAGTTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTG 5950 Query 146571 CGT---CAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTG-ACGCACT 146626 ||| | || | | ||| |||| | || | || ||| | | || Sbjct 5951 CGTGACCTCGTGAAGCTTCTGGA---AGTCGTACGTCT---CGTTGGCGTAGTCCACAAA 6004 Query 146627 TGTTGACGGCG--ATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTG 146684 | | | ||| | || | || ||| || || || ||| || |||| |||| Sbjct 6005 AGACGGCAGCGCCAGCGACGACAGGTTGCACACCGCCACCTCATCGGGCGCGCAGTACTC 6064 Query 146685 CACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAA 146744 | |||||| | ||| |||||| || |||| |||||| || || ||||| || Sbjct 6065 GATAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCT--- 6121 Query 146745 CTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTC 146801 ||| ||||||| |||||||||| |||||| |||| ||||| || | | ||| Sbjct 6122 CTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTCTGCGCCTC 6181 Query 146802 GACGATGAATCTAAACAAATC-TCT-GGCCTTTACTTGTCTTTCGTACA-GTTTATTCTT 146858 | || | | | || | | ||| |||||| || || || || | | ||| Sbjct 6182 CAGGACG--GCATACCACAGCTTCTGGGCCTTGAC-CGTGCGACGGCCACGGCCCTCCTT 6238 Query 146859 TTCGTATTTCTCGTACAATATTTCAAAACTAG-AACCGTACTCGTCGAGGAGGCCGGGAT 146917 ||||| ||||||||||| || |||| | ||||| |||| || || || Sbjct 6239 CTCGTACTTCTCGTACAAGGCCTC-GAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGC 6297 Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAAT 146977 ||| ||||| || | ||||| ||| || |||| || ||| || | ||| |||| | Sbjct 6298 ACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGT 6357 Query 146978 CGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGC 147037 | || ||||| || |||| | || |||||| || | ||||| | ||||| | | Sbjct 6358 CCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTG-CCATGGTTC 6416 Query 147038 GT-CTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGT 147096 | | || || ||||| ||| | | || | |||||| ||||||| ||| | || Sbjct 6417 TTGCGCAGGTCGAGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGATGCAGAAG 6476 Query 147097 GCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGT 147153 |||||| ||| || || ||||| || || | ||| || |||| ||||| || || Sbjct 6477 GCGCCTGGCCGCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGC 6536 Query 147154 AACATGGACACGAGGCCGCCGGATTT---TGTGGTGCCG---TTGTAT-------TGAGC 147200 | ||| | || | |||| |||| | |||||||| ||||| || || Sbjct 6537 AGCATAGGGACAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTG-GC 6595 Query 147201 GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCG-GACT 147259 || || || || ||| ||| ||||| || || || || || |||| |||| | | Sbjct 6596 GCGGATGCGGTGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGT 6655 Query 147260 CGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACG 147319 | || | ||| | ||||||||| || |||||||| ||||| ||| |||||| |||| Sbjct 6656 CTTG-AGGGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACG 6714 Query 147320 AACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGT---GA 147376 | | |||| | |||||| || || |||||||| ||||| || || Sbjct 6715 ACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGA 6774 Query 147377 ACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAA 147436 || || || ||| | | ||||| || | | ||| | |||| ||||| | Sbjct 6775 ACTTG-TTGGA--CATGTAGTTGTACGTCTCCAGGACGCGCTCCACGTTGTCGCCCCAGA 6831 Query 147437 TGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTT 147496 | | | || |||||||||| |||||||||||| || || | ||| | | |||| | Sbjct 6832 TCCCGACCGCCACGCGCATGATCATGTGCTGGGGCCGCTCAACGATCTTGCCGTTGAGCT 6891 Query 147497 TTAATAGATATCCATTGGT-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTC 147551 | | || || | | | | ||| || ||||| |||||||| | ||||| | |||| Sbjct 6892 TAAGCAGGTA-CGAACGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 6946 >seq204 Length=21219 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||| ||| || || || ||||| ||| | ||||| Sbjct 5899 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 5840 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| ||||| || |||||||||||| Sbjct 5839 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 5780 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||||| ||||| || || | ||| | Sbjct 5779 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTGATG 5720 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || || || |||||||| Sbjct 5719 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 5685 >seq23 Length=165582 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 62221 CCACCGCGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 62162 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || || |||||| |||||||| || || || Sbjct 62161 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 62102 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| ||||||| |||||| Sbjct 62101 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 62042 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || | || | || ||||| ||||| || || || ||| Sbjct 62041 TCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 62003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495426840960