Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq376 170 2e-37
seq1 98.7 1e-15
>seq376
Length=8930
Score = 170 bits (188), Expect = 2e-37
Identities = 1066/1691 (63%), Gaps = 51/1691 (3%)
Strand=Plus/Plus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
|| ||||||||||| || |||||||| ||| ||||||| | | |||||| ||
Sbjct 5142 CGCAGGTAGTACATACCGGTCTTGAGTCCCAACTTCCAGCCCGTAAAATGCATGCTGGTA 5201
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA- 115676
| |||| | || || |||| | ||| | || || || ||||||||
Sbjct 5202 ATCTTGCCCATAGTCGGTGCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAC 5261
Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTT 115734
||| || || || |||||||| | | || ||| | | | ||| |||||||| ||
Sbjct 5262 GCG-CCACGGTCGGCCGCCATCTGCA-CA-ATCGTGCGCTGCGAGATCTCCCACACTGTC 5318
Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACC---T 115791
|||| || ||| || ||| | ||||| | | ||| || |||| || || || |
Sbjct 5319 TTGTACAGCGCCTTGATTTCAGCCGGGATGTTCGGGATGTTCTGGACCGACCCGCCCTCT 5378
Query 115792 GCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851
|| ||| || | | |||||| | | ||||| || || || | | || |||| |
Sbjct 5379 GCAATGA---TGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTTC 5435
Query 115852 ACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTG 115911
| || ||||| || ||||| || || || || | | | |||||||||
Sbjct 5436 AGAAGCCATGGGTTGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTG 5495
Query 115912 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 115971
| |||||||||||| ||||| || ||||| |||| ||| || | || || || || |||
Sbjct 5496 GACGTGTATGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGC 5555
Query 115972 ATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGG--- 116028
|| || |||| | || |||||||| | || | || | || ||||||
Sbjct 5556 ATCGGCGCCACCAACAGACTGTTGCGCACGCCGTGCTCCTTGAT------CTTGAGACGC 5609
Query 116029 ---GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATA 116085
| ||||||||| | | | | | || | ||||||||||||||||| |||||
Sbjct 5610 AGCGAGTCCCAGTCCCACAGGTCCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATG 5669
Query 116086 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 116145
|| || ||| | || || ||||| | ||| || |||||| | || ||||| |||
Sbjct 5670 CCCTGCGACACGGGAGACCCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCG 5729
Query 116146 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 116205
| |||| || || ||||| || || |||||||| || | || | |
Sbjct 5730 CATGACGCCGTCAGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGC 5789
Query 116206 GCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACA 116265
||||| || ||||| | | || | | || ||||||| | || ||||||
Sbjct 5790 GCCTCCGGCGACTCAAAAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACA 5849
Query 116266 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAA 116325
|| | || || || || || | ||| || || || || | ||| || || |
Sbjct 5850 CCCACACCGATCGGCCGGTGACGCATGTTGCTGTTGCGCGCCTCCGGCACAGGGTAGTAG 5909
Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385
|| ||||| | | || || || || |||| |||| || ||||||||
Sbjct 5910 TTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTC 5969
Query 116386 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445
| | | || | | | | | | ||| | || || || | |||| |||
Sbjct 5970 TGGAAGTCGTACGTCTCGTTGGCGTAGTCCACAAAAGACGGCAGCGCCAGCGACGACAGG 6029
Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 116505
|| ||||| | |||||| | |||||| ||||| || || |||| || ||
Sbjct 6030 TTGCACACCGCCACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAG 6089
Query 116506 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGC 116565
|| |||||||||| |||||| || || ||| ||| || |||||||| |||
Sbjct 6090 CTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGC 6149
Query 116566 ATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGC 116624
|| | || | || |||||||| || | || || | || | ||| | | || | | |
Sbjct 6150 ATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACAGCTTCTGGGCC 6209
Query 116625 TGGCACAGTGGCGTTGGCT-CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACT 116683
| | || ||| || ||| || ||||||| ||||||||| ||| | |||||| ||||
Sbjct 6210 TTG-ACCGTG-CGACGGCCACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACT 6267
Query 116684 CTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGA 116742
| || || ||| || | || || || || || || || | || | ||| |
Sbjct 6268 CGTCGCCGT-AGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCCAGTCG 6326
Query 116743 CCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCC 116802
|| || ||| || ||||||||||| ||||| ||||||||||||||| ||| || ||
Sbjct 6327 CCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCG 6386
Query 116803 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 116862
|| ||| | || || | || || || |||| || | || || | | ||
Sbjct 6387 CGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCA 6446
Query 116863 GCGTGCCACGGTTCCAGGT------ACACCGCGATTGACCCCTTGCGACGACCAGCCTGG 116916
|| |||||||| ||||||| | | ||| || || |||| ||| |||||
Sbjct 6447 GCATGCCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTTG---TTTCCACCCTGG 6503
Query 116917 TTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGG 116976
| ||||| | ||||| ||| || ||||| ||||| || | || || | |||
Sbjct 6504 TCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTA 6563
Query 116977 CCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAA 117034
|| || || || || || ||| | |||| | || ||||| || ||| || |
Sbjct 6564 CCGTTGGTGCCGGCAATGTATGAGCC--AGTGGCGCGGATGCGGTGGACGTTCATCCCGA 6621
Query 117035 TACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGA 117094
| || || ||| ||| ||||| ||||| | |||| || ||||||| || || |
Sbjct 6622 TGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCCCTCAA 6681
Query 117095 TCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG-TGGCCTT--GGTGTAC 117151
| |||| |||| | | | |||||||| |||| | ||| ||| || || |
Sbjct 6682 TGCTGTCATCCTTCATGTCAACCAGGAAGCA---CGACGCGAGCTGGGCTTGGGGCGTGC 6738
Query 117152 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAG 117210
|||||||||| || || || | |||||| |||| | || | | |||||| | | |||
Sbjct 6739 CAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGTAC 6797
Query 117211 GTCTCCAAGAC 117221
||||||| |||
Sbjct 6798 GTCTCCAGGAC 6808
>seq1
Length=398088
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| || ||||||||||| ||||| || || || |||||| ||| || ||||| || ||
Sbjct 36788 GTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCC 36729
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||||| |||||| || | | || | ||| ||||||||| ||||| ||
Sbjct 36728 GCGCTTCTTCAGCCAGAAGATGGACGAGAAAGCGCCGCTGAAGAAGATGCCCTCGACGGC 36669
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679
||||| || | ||||||| |||||||
Sbjct 36668 AGCGAATGCGACCAGACGCTGCGCAAAGG 36640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613500267368640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |