Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq376 170 2e-37 seq1 98.7 1e-15 >seq376 Length=8930 Score = 170 bits (188), Expect = 2e-37 Identities = 1066/1691 (63%), Gaps = 51/1691 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || |||||||| ||| ||||||| | | |||||| || Sbjct 5142 CGCAGGTAGTACATACCGGTCTTGAGTCCCAACTTCCAGCCCGTAAAATGCATGCTGGTA 5201 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA- 115676 | |||| | || || |||| | ||| | || || || |||||||| Sbjct 5202 ATCTTGCCCATAGTCGGTGCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAC 5261 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTT 115734 ||| || || || |||||||| | | || ||| | | | ||| |||||||| || Sbjct 5262 GCG-CCACGGTCGGCCGCCATCTGCA-CA-ATCGTGCGCTGCGAGATCTCCCACACTGTC 5318 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACC---T 115791 |||| || ||| || ||| | ||||| | | ||| || |||| || || || | Sbjct 5319 TTGTACAGCGCCTTGATTTCAGCCGGGATGTTCGGGATGTTCTGGACCGACCCGCCCTCT 5378 Query 115792 GCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 || ||| || | | |||||| | | ||||| || || || | | || |||| | Sbjct 5379 GCAATGA---TGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTTC 5435 Query 115852 ACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTG 115911 | || ||||| || ||||| || || || || | | | ||||||||| Sbjct 5436 AGAAGCCATGGGTTGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTG 5495 Query 115912 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 115971 | |||||||||||| ||||| || ||||| |||| ||| || | || || || || ||| Sbjct 5496 GACGTGTATGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGC 5555 Query 115972 ATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGG--- 116028 || || |||| | || |||||||| | || | || | || |||||| Sbjct 5556 ATCGGCGCCACCAACAGACTGTTGCGCACGCCGTGCTCCTTGAT------CTTGAGACGC 5609 Query 116029 ---GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATA 116085 | ||||||||| | | | | | || | ||||||||||||||||| ||||| Sbjct 5610 AGCGAGTCCCAGTCCCACAGGTCCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATG 5669 Query 116086 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 116145 || || ||| | || || ||||| | ||| || |||||| | || ||||| ||| Sbjct 5670 CCCTGCGACACGGGAGACCCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCG 5729 Query 116146 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 116205 | |||| || || ||||| || || |||||||| || | || | | Sbjct 5730 CATGACGCCGTCAGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGC 5789 Query 116206 GCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACA 116265 ||||| || ||||| | | || | | || ||||||| | || |||||| Sbjct 5790 GCCTCCGGCGACTCAAAAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACA 5849 Query 116266 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAA 116325 || | || || || || || | ||| || || || || | ||| || || | Sbjct 5850 CCCACACCGATCGGCCGGTGACGCATGTTGCTGTTGCGCGCCTCCGGCACAGGGTAGTAG 5909 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 || ||||| | | || || || || |||| |||| || |||||||| Sbjct 5910 TTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTC 5969 Query 116386 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445 | | | || | | | | | | ||| | || || || | |||| ||| Sbjct 5970 TGGAAGTCGTACGTCTCGTTGGCGTAGTCCACAAAAGACGGCAGCGCCAGCGACGACAGG 6029 Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 116505 || ||||| | |||||| | |||||| ||||| || || |||| || || Sbjct 6030 TTGCACACCGCCACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAG 6089 Query 116506 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGC 116565 || |||||||||| |||||| || || ||| ||| || |||||||| ||| Sbjct 6090 CTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGC 6149 Query 116566 ATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGC 116624 || | || | || |||||||| || | || || | || | ||| | | || | | | Sbjct 6150 ATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACAGCTTCTGGGCC 6209 Query 116625 TGGCACAGTGGCGTTGGCT-CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACT 116683 | | || ||| || ||| || ||||||| ||||||||| ||| | |||||| |||| Sbjct 6210 TTG-ACCGTG-CGACGGCCACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACT 6267 Query 116684 CTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGA 116742 | || || ||| || | || || || || || || || | || | ||| | Sbjct 6268 CGTCGCCGT-AGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCCAGTCG 6326 Query 116743 CCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCC 116802 || || ||| || ||||||||||| ||||| ||||||||||||||| ||| || || Sbjct 6327 CCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCG 6386 Query 116803 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 116862 || ||| | || || | || || || |||| || | || || | | || Sbjct 6387 CGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCA 6446 Query 116863 GCGTGCCACGGTTCCAGGT------ACACCGCGATTGACCCCTTGCGACGACCAGCCTGG 116916 || |||||||| ||||||| | | ||| || || |||| ||| ||||| Sbjct 6447 GCATGCCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTTG---TTTCCACCCTGG 6503 Query 116917 TTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGG 116976 | ||||| | ||||| ||| || ||||| ||||| || | || || | ||| Sbjct 6504 TCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTA 6563 Query 116977 CCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAA 117034 || || || || || || ||| | |||| | || ||||| || ||| || | Sbjct 6564 CCGTTGGTGCCGGCAATGTATGAGCC--AGTGGCGCGGATGCGGTGGACGTTCATCCCGA 6621 Query 117035 TACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGA 117094 | || || ||| ||| ||||| ||||| | |||| || ||||||| || || | Sbjct 6622 TGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCCCTCAA 6681 Query 117095 TCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG-TGGCCTT--GGTGTAC 117151 | |||| |||| | | | |||||||| |||| | ||| ||| || || | Sbjct 6682 TGCTGTCATCCTTCATGTCAACCAGGAAGCA---CGACGCGAGCTGGGCTTGGGGCGTGC 6738 Query 117152 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAG 117210 |||||||||| || || || | |||||| |||| | || | | |||||| | | ||| Sbjct 6739 CAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGTAC 6797 Query 117211 GTCTCCAAGAC 117221 ||||||| ||| Sbjct 6798 GTCTCCAGGAC 6808 >seq1 Length=398088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || ||||||||||| ||||| || || || |||||| ||| || ||||| || || Sbjct 36788 GTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCC 36729 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| || | | || | ||| ||||||||| ||||| || Sbjct 36728 GCGCTTCTTCAGCCAGAAGATGGACGAGAAAGCGCCGCTGAAGAAGATGCCCTCGACGGC 36669 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || | ||||||| ||||||| Sbjct 36668 AGCGAATGCGACCAGACGCTGCGCAAAGG 36640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500267368640