Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq376 149 1e-30 >seq376 Length=8930 Score = 149 bits (164), Expect = 1e-30 Identities = 559/851 (66%), Gaps = 28/851 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 || ||||||||||||||| || | | | | || | | ||| | | ||| |||||||| | Sbjct 5099 CTGGTCCACCGTGAACTGGATCGGCTGCGCTGCCG-CTTGCGTGCGCAGGTAGTACATAC 5157 Query 203898 CGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 ||||||| || ||| || ||| |||||| | |||||| | | |||| || | Sbjct 5158 CGGTCTTGAGTCCCAACTTCCAGCCCGTAAAA-TGCATGCTGGTAATCTTGCCCATAGTC 5216 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || || |||||||||||| || ||||| ||||||||||| | |||| || || || Sbjct 5217 GGTGCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAACG-CGCCACGGTCGGC 5275 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGG 204074 ||||| | | ||| || |||||| ||||||||||| |||||| ||| || || Sbjct 5276 CGCCATCTGCACAATCGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGCGCCT---- 5331 Query 204075 TGTGTTGAGGCAC-ATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 || || || | || ||| | || ||| | ||| ||| || || || | | Sbjct 5332 TGATTTCAGCCGGGATGTTCGGGATGTTCTGGACCGACCCGCCCTCTGCAATGATGCGGT 5391 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | | ||| ||||| ||||| | ||| ||| || || ||||||| Sbjct 5392 TCTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTTCAGAAGCCATGGGTTGA 5451 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || || | |||||| | || | | | |||| ||| |||| |||| Sbjct 5452 CCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGA 5511 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||||||| | ||||| | ||| ||||| ||||| || |||| | || Sbjct 5512 AGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAACA 5571 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | ||||||||| |||| | | || | || | ||| ||| |||||| || Sbjct 5572 GACTGTTGCGCACGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCCAGTCCCACAGGT 5631 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | | || || ||| ||||||| || ||||| | |||||| || || || |||| Sbjct 5632 CCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAGACCCCT 5691 Query 204432 TGTACGTCGGATA-AGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGA 204490 |||||||| || | || | |||| ||||| | ||| || || | || || Sbjct 5692 CGTACGTCGAGTACACGCCCTCCAGCTTC-GCCAGGTCGCATGACGCCGTCAGCGCAGCG 5750 Query 204491 TAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCGTCAAACGC 204549 | ||| || |||||||||||||| ||| | || || ||||||| ||||| | Sbjct 5751 TGGTAGATCGTCTCAAAGATCTGCTTGTTGAG-CTCACGCGCCTCCGGCGACTCAAAAGG 5809 Query 204550 CAGACCCAGCATGGCA--AACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGGTCTG 204607 || | |||| | || ||| | |||||||||||||| || || | || | ||| | | Sbjct 5810 CATCCGCAGC--GCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGGCCGG 5867 Query 204608 TCCTGAGAGTTTCTGTGGTTGGCG-CCGTCAAAAGC--GTAGTCCGACTTGTCGATCACA 204664 | | ||| |||| | || ||| || | | ||||| ||| |||||| | | Sbjct 5868 TGACGCATGTTGCTGTTGCGCGCCTCCGGCACAGGGTAGTAGTT-GAC--GTCGATGATA 5924 Query 204665 CGGTTCAGGTT 204675 ||||||||||| Sbjct 5925 CGGTTCAGGTT 5935 Score = 141 bits (156), Expect = 1e-28 Identities = 564/873 (65%), Gaps = 20/873 (2%) Strand=Plus/Plus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | || |||||| ||||||||| ||| ||||||||||| ||||||||| | Sbjct 6102 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTG 6161 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACT-TGCTT 205041 ||| ||||| |||| | ||| | | ||||| | | |||| || ||| Sbjct 6162 CCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACAGCTTCTGGGCCTTGACCGTGCGA 6221 Query 205042 C----ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGT 205097 | ||| | ||| | |||||| || ||||| ||| | || || |||| Sbjct 6222 CGGCCACGGCCCTCCTT-----CTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCGT 6276 Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCT 205156 | ||| ||| || || || | ||||| |||||||| | ||| | | || ||| Sbjct 6277 AGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCT 6336 Query 205157 TTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCC-T 205215 ||| | || ||| |||||||| |||||| || | ||||| || ||||| | | Sbjct 6337 C-CACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGT 6395 Query 205216 AATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCC 205274 | ||| || | ||| ||||||| || ||| || || || | | ||| || |||| Sbjct 6396 ACCTCC-TCCTTGCCATGGTTCTTGCGCAGGTCGAGG-AACTCGAACACGTCAGCATGCC 6453 Query 205275 ACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGC 205334 ||||||| | | | | | |||||||||| |||||| |||||||||||||| || Sbjct 6454 ACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTTGTTTCCACCCTGGTCCACATAGC 6513 Query 205335 GAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 | | | | |||||| || |||||||| || || | ||||||| || ||||| |||| Sbjct 6514 GGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTACCGTTGGTGC 6573 Query 205395 TGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAAC 205454 | ||| ||||| || | | | | || | | || || || || | Sbjct 6574 CGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCATCCCGATGCCACCCGCCG 6633 Query 205455 ACTTGGCGATCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513 ||||| |||| |||| | ||||| || ||| ||||||||| | ||| || ||| Sbjct 6634 TCTTGGAGATCATAGCGCAAGTCTTG-AGGGTGTCGTAGATGCCCTCAATGCTGTCATCC 6692 Query 205514 GCCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAG 205572 || |||| ||||| ||||||| || |||| ||| | ||||| |||| ||| || Sbjct 6693 TTCA-TGTCAACCAGGAAGCACGACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAAG 6751 Query 205573 CGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCT 205632 |||||| ||||| ||||| ||| | | || | |||| |||||||| |||| Sbjct 6752 CGTGGGCGACGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTACGTCTCCAGGACGCG 6811 Query 205633 CTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692 ||||| | | ||| || || | || | | ||||| | ||| || || | ||| Sbjct 6812 CTCCACGTTGTCGCCCCAGATCCCGACCGCCACGCGCATGATCATGTGCTGGGGCCGCTC 6871 Query 205693 CATCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAA 205752 | | | | |||| | ||| ||||| || | | ||| || || || | |||| | Sbjct 6872 AACGATCTTGCCGTTGAGCTTAAGCAGGTACGAACGCTCCAGCGTCTTGAAGCCAAAGTA 6931 Query 205753 GTTGAAGGTGTAGTCCCTAGAATAGTCGATGGC 205785 | | || || |||| | |||| ||||||| Sbjct 6932 TTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 6964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795146214746240