Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq376 149 1e-30
>seq376
Length=8930
Score = 149 bits (164), Expect = 1e-30
Identities = 559/851 (66%), Gaps = 28/851 (3%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897
|| ||||||||||||||| || | | | | || | | ||| | | ||| |||||||| |
Sbjct 5099 CTGGTCCACCGTGAACTGGATCGGCTGCGCTGCCG-CTTGCGTGCGCAGGTAGTACATAC 5157
Query 203898 CGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
||||||| || ||| || ||| |||||| | |||||| | | |||| || |
Sbjct 5158 CGGTCTTGAGTCCCAACTTCCAGCCCGTAAAA-TGCATGCTGGTAATCTTGCCCATAGTC 5216
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015
|| || |||||||||||| || ||||| ||||||||||| | |||| || || ||
Sbjct 5217 GGTGCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAACG-CGCCACGGTCGGC 5275
Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGG 204074
||||| | | ||| || |||||| ||||||||||| |||||| ||| || ||
Sbjct 5276 CGCCATCTGCACAATCGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGCGCCT---- 5331
Query 204075 TGTGTTGAGGCAC-ATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131
|| || || | || ||| | || ||| | ||| ||| || || || | |
Sbjct 5332 TGATTTCAGCCGGGATGTTCGGGATGTTCTGGACCGACCCGCCCTCTGCAATGATGCGGT 5391
Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191
|| || | | ||| ||||| ||||| | ||| ||| || || |||||||
Sbjct 5392 TCTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTTCAGAAGCCATGGGTTGA 5451
Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251
| ||| || || || | |||||| | || | | | |||| ||| |||| ||||
Sbjct 5452 CCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGA 5511
Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311
| ||||||||||| | ||||| | ||| ||||| ||||| || |||| | ||
Sbjct 5512 AGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAACA 5571
Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371
| ||||||||| |||| | | || | || | ||| ||| |||||| ||
Sbjct 5572 GACTGTTGCGCACGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCCAGTCCCACAGGT 5631
Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431
| | || || ||| ||||||| || ||||| | |||||| || || || ||||
Sbjct 5632 CCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAGACCCCT 5691
Query 204432 TGTACGTCGGATA-AGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGA 204490
|||||||| || | || | |||| ||||| | ||| || || | || ||
Sbjct 5692 CGTACGTCGAGTACACGCCCTCCAGCTTC-GCCAGGTCGCATGACGCCGTCAGCGCAGCG 5750
Query 204491 TAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCGTCAAACGC 204549
| ||| || |||||||||||||| ||| | || || ||||||| ||||| |
Sbjct 5751 TGGTAGATCGTCTCAAAGATCTGCTTGTTGAG-CTCACGCGCCTCCGGCGACTCAAAAGG 5809
Query 204550 CAGACCCAGCATGGCA--AACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGGTCTG 204607
|| | |||| | || ||| | |||||||||||||| || || | || | ||| | |
Sbjct 5810 CATCCGCAGC--GCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGGCCGG 5867
Query 204608 TCCTGAGAGTTTCTGTGGTTGGCG-CCGTCAAAAGC--GTAGTCCGACTTGTCGATCACA 204664
| | ||| |||| | || ||| || | | ||||| ||| |||||| | |
Sbjct 5868 TGACGCATGTTGCTGTTGCGCGCCTCCGGCACAGGGTAGTAGTT-GAC--GTCGATGATA 5924
Query 204665 CGGTTCAGGTT 204675
|||||||||||
Sbjct 5925 CGGTTCAGGTT 5935
Score = 141 bits (156), Expect = 1e-28
Identities = 564/873 (65%), Gaps = 20/873 (2%)
Strand=Plus/Plus
Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982
|||| | || |||||| ||||||||| ||| ||||||||||| ||||||||| |
Sbjct 6102 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTG 6161
Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACT-TGCTT 205041
||| ||||| |||| | ||| | | ||||| | | |||| || |||
Sbjct 6162 CCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACAGCTTCTGGGCCTTGACCGTGCGA 6221
Query 205042 C----ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGT 205097
| ||| | ||| | |||||| || ||||| ||| | || || ||||
Sbjct 6222 CGGCCACGGCCCTCCTT-----CTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCGT 6276
Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCT 205156
| ||| ||| || || || | ||||| |||||||| | ||| | | || |||
Sbjct 6277 AGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCT 6336
Query 205157 TTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCC-T 205215
||| | || ||| |||||||| |||||| || | ||||| || ||||| | |
Sbjct 6337 C-CACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGT 6395
Query 205216 AATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCC 205274
| ||| || | ||| ||||||| || ||| || || || | | ||| || ||||
Sbjct 6396 ACCTCC-TCCTTGCCATGGTTCTTGCGCAGGTCGAGG-AACTCGAACACGTCAGCATGCC 6453
Query 205275 ACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGC 205334
||||||| | | | | | |||||||||| |||||| |||||||||||||| ||
Sbjct 6454 ACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTTGTTTCCACCCTGGTCCACATAGC 6513
Query 205335 GAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394
| | | | |||||| || |||||||| || || | ||||||| || ||||| ||||
Sbjct 6514 GGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTACCGTTGGTGC 6573
Query 205395 TGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAAC 205454
| ||| ||||| || | | | | || | | || || || || |
Sbjct 6574 CGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCATCCCGATGCCACCCGCCG 6633
Query 205455 ACTTGGCGATCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513
||||| |||| |||| | ||||| || ||| ||||||||| | ||| || |||
Sbjct 6634 TCTTGGAGATCATAGCGCAAGTCTTG-AGGGTGTCGTAGATGCCCTCAATGCTGTCATCC 6692
Query 205514 GCCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAG 205572
|| |||| ||||| ||||||| || |||| ||| | ||||| |||| ||| ||
Sbjct 6693 TTCA-TGTCAACCAGGAAGCACGACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAAG 6751
Query 205573 CGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCT 205632
|||||| ||||| ||||| ||| | | || | |||| |||||||| ||||
Sbjct 6752 CGTGGGCGACGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTACGTCTCCAGGACGCG 6811
Query 205633 CTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692
||||| | | ||| || || | || | | ||||| | ||| || || | |||
Sbjct 6812 CTCCACGTTGTCGCCCCAGATCCCGACCGCCACGCGCATGATCATGTGCTGGGGCCGCTC 6871
Query 205693 CATCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAA 205752
| | | | |||| | ||| ||||| || | | ||| || || || | |||| |
Sbjct 6872 AACGATCTTGCCGTTGAGCTTAAGCAGGTACGAACGCTCCAGCGTCTTGAAGCCAAAGTA 6931
Query 205753 GTTGAAGGTGTAGTCCCTAGAATAGTCGATGGC 205785
| | || || |||| | |||| |||||||
Sbjct 6932 TTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 6964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795146214746240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |