Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq23 132 1e-25
seq233 129 1e-24
seq204 96.9 8e-15
>seq23
Length=165582
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||| |||||||||||||| |||| ||||||||| | || |||
Sbjct 62215 CGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTC 62156
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || ||||||||||| || || ||||| || |||||||||||||| || ||
Sbjct 62155 CGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 62096
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| ||||| | | || || |||||
Sbjct 62095 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAA 62036
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621
||||| ||||| ||||| || || ||||| |||
Sbjct 62035 GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 62003
>seq233
Length=18884
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| || ||||||||||| |||| ||||||||| || || | |||||
Sbjct 2048 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCC 2107
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || ||||| || |||||||||||||| || || || |||
Sbjct 2108 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 2167
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| |||| ||||| | | || || |||| |||||||||
Sbjct 2168 TGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTC 2227
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || |||||
Sbjct 2228 TTGCCGGTGAGCGTCTTGACGAAGATTTG 2256
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| || ||||||||||| || | ||||||||| || || | || ||
Sbjct 1820 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCC 1879
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || |||||||| |||||||||||||| || || || |||
Sbjct 1880 TCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCC 1939
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| |||| ||||| | | || || |||| |||||||||
Sbjct 1940 TGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTC 1999
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || |||||
Sbjct 2000 TTGCCGGTGAGCGTCTTGACGAAGATTTG 2028
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| || || |||||| || | ||||||||| | || |||| |||||
Sbjct 1592 AGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCC 1651
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || ||||| || || |||||||||||||| || || || |||
Sbjct 1652 TCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 1711
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||||| | | || || || | ||| ||||||
Sbjct 1712 TGGATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTC 1771
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| || || || ||||| || ||
Sbjct 1772 TTGCCCGTCAGGGTCTTGACAAAGATCTG 1800
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||| || || |||||| |||| ||||||||| | || |||
Sbjct 1355 CGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTC 1414
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || ||||||||||| || || ||||| || |||||||||||||| || ||
Sbjct 1415 CGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCC 1474
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| || | ||||| | | || || || | |
Sbjct 1475 TCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGC 1534
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| ||||| || || || || || || ||
Sbjct 1535 GTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTG 1572
>seq204
Length=21219
Score = 96.9 bits (106), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||| || || |||||| |||| ||||||||| | | ||
Sbjct 5905 CGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 5846
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| ||||||||||| || ||||||||||| || || ||
Sbjct 5845 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 5786
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| ||||| | | || || || |
Sbjct 5785 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCACCTCAAGG 5726
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| |||||||| || || || || || ||
Sbjct 5725 GTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTG 5688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178907945140568
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