Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq204 183 3e-41
seq233 168 8e-37
seq23 143 3e-29
>seq204
Length=21219
Score = 183 bits (202), Expect = 3e-41
Identities = 175/223 (78%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| |||| || |||||||| ||||| ||||||||||| || ||||| ||
Sbjct 5899 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 5840
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||||||||| |||| |||||||||||||| ||| | || |||||||
Sbjct 5839 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 5780
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTG 46555
||| |||||| ||||| | | | |||||| |||| ||||| || | |||
Sbjct 5779 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTC---TCCACCTCAAGGGTG 5723
Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
||||| |||||||| || || || || ||||| ||||| ||||
Sbjct 5722 ATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTTGC 5680
>seq233
Length=18884
Score = 168 bits (186), Expect = 8e-37
Identities = 177/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||| | |||||| |||| || |||||||| || || ||||||||||
Sbjct 1575 TGCCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGG 1634
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || || ||| | || || ||||||||||| ||||| |||| ||||||||||| | ||
Sbjct 1635 ACAGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCG 1694
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543
| | || |||||||||| ||||||| ||||| ||| | | | ||||||||| |||
Sbjct 1695 GGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCGCTGCTCTCC 1753
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || | ||| || || ||||||||||| || || |||||||| |||||
Sbjct 1754 ACCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803
Score = 161 bits (178), Expect = 1e-34
Identities = 167/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| |||| || |||||||| ||||| |||||||| || || || ||| ||
Sbjct 1361 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCG 1420
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||||||||| || || |||| ||||||||||| | ||| | | |||||||
Sbjct 1421 TCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTG 1480
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| ||||||| ||||| ||| | | | ||||||||| ||||| || | ||| ||
Sbjct 1481 TCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAAT 1539
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||||||||| || || || ||||| |||||
Sbjct 1540 CGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575
Score = 149 bits (164), Expect = 7e-31
Identities = 161/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| |||| || |||||| ||||| ||||||||| || ||||| | || ||
Sbjct 2050 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 2109
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||| || || |||| |||||||||||| | ||| | || ||||||||||
Sbjct 2110 CAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 2169
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562
|||||| ||||| ||| | | | |||||| ||| ||||| |||| ||||| || |
Sbjct 2170 AATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCT 2228
Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| || ||||| || || |||||||||||
Sbjct 2229 TGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259
Score = 141 bits (156), Expect = 1e-28
Identities = 171/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||| | |||||| |||| || |||||| || || |||||||||
Sbjct 1803 TGCCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGC 1862
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| ||||| |||| || ||||||||||| || || || | |||||||||||| | ||
Sbjct 1863 TCAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCG 1922
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543
| | || |||||| ||| |||||| ||||| ||| | | | |||||| ||| |||
Sbjct 1923 GGATGCCCTCCTTATCCTGAATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCC 1981
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| ||||| || ||||| || ||||| || || |||||||||||
Sbjct 1982 ACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
>seq23
Length=165582
Score = 143 bits (158), Expect = 3e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| |||||| |||| || |||||| ||||| ||||||||||| || || || |
Sbjct 62210 ACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCC 62151
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||||||||| || || |||| |||||||||||| | ||| | || ||||||
Sbjct 62150 GTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 62091
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||||| | | | |||||| || || || |||| |||||
Sbjct 62090 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGAT 62031
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAA 46584
||| ||||||||||| || || || ||
Sbjct 62030 GGTCTTGCCCGTCAGGGTCTTCACGAA 62004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565232012806080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |