Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq204 183 3e-41 seq233 168 8e-37 seq23 143 3e-29 >seq204 Length=21219 Score = 183 bits (202), Expect = 3e-41 Identities = 175/223 (78%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||||| ||||| ||||||||||| || ||||| || Sbjct 5899 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 5840 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| |||| |||||||||||||| ||| | || ||||||| Sbjct 5839 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 5780 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTG 46555 ||| |||||| ||||| | | | |||||| |||| ||||| || | ||| Sbjct 5779 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTC---TCCACCTCAAGGGTG 5723 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 ||||| |||||||| || || || || ||||| ||||| |||| Sbjct 5722 ATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTTGC 5680 >seq233 Length=18884 Score = 168 bits (186), Expect = 8e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||||| || || |||||||||| Sbjct 1575 TGCCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGG 1634 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || ||| | || || ||||||||||| ||||| |||| ||||||||||| | || Sbjct 1635 ACAGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCG 1694 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| ||||||| ||||| ||| | | | ||||||||| ||| Sbjct 1695 GGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCGCTGCTCTCC 1753 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||| || || ||||||||||| || || |||||||| ||||| Sbjct 1754 ACCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803 Score = 161 bits (178), Expect = 1e-34 Identities = 167/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||||| ||||| |||||||| || || || ||| || Sbjct 1361 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCG 1420 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| ||||||||||| | ||| | | ||||||| Sbjct 1421 TCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTG 1480 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| ||||| ||| | | | ||||||||| ||||| || | ||| || Sbjct 1481 TCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAAT 1539 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || || || ||||| ||||| Sbjct 1540 CGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575 Score = 149 bits (164), Expect = 7e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| ||||||||| || ||||| | || || Sbjct 2050 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 2109 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| |||||||||||| | ||| | || |||||||||| Sbjct 2110 CAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 2169 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| ||||| ||| | | | |||||| ||| ||||| |||| ||||| || | Sbjct 2170 AATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCT 2228 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| || || ||||||||||| Sbjct 2229 TGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259 Score = 141 bits (156), Expect = 1e-28 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||| || || ||||||||| Sbjct 1803 TGCCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGC 1862 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| || || || | |||||||||||| | || Sbjct 1863 TCAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCG 1922 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||| ||| |||||| ||||| ||| | | | |||||| ||| ||| Sbjct 1923 GGATGCCCTCCTTATCCTGAATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCC 1981 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || ||||| || ||||| || || ||||||||||| Sbjct 1982 ACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031 >seq23 Length=165582 Score = 143 bits (158), Expect = 3e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||| ||||| ||||||||||| || || || | Sbjct 62210 ACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCC 62151 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| || || |||| |||||||||||| | ||| | || |||||| Sbjct 62150 GTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 62091 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | |||||| || || || |||| ||||| Sbjct 62090 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGAT 62031 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAA 46584 ||| ||||||||||| || || || || Sbjct 62030 GGTCTTGCCCGTCAGGGTCTTCACGAA 62004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232012806080