Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 seq204 145 8e-30 seq233 143 3e-29 seq23 127 2e-24 seq34 87.8 2e-12 >seq1 Length=398088 Score = 194 bits (214), Expect = 2e-44 Identities = 349/502 (70%), Gaps = 10/502 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || |||||||| || || || || || ||| ||| ||| | Sbjct 37093 TTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 37034 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720 ||| || || ||||||||| | | ||| |||| |||||| || || Sbjct 37033 TCCATGAAGTCAAAGGGGTTGCTCGAGCGGTACACCTTGTCGTTGCCGAG-AGAA--ACC 36977 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 ||||| | |||||||| ||||| ||||| ||| |||| | ||| | || | ||||| Sbjct 36976 AGCAGGCGATCGGCCACAAACTCAATGTACTGCTTCATGAGCGTCG-AGTTCATGCCCAG 36918 Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 ||| |||| ||||| || |||||||| || |||||||| ||| || ||| || Sbjct 36917 CAGGGCGCAG-GGCAGAGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGCATCGACGA 36859 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 ||| ||| || | | ||| || || | | || ||| ||||| || ||| | Sbjct 36858 TGATGTCCTCAATAACCTTCTTGCTGGGGCGGTTCTTCAGATGGGAGAACAGCAGGCAGG 36799 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 | |||||| |||| ||||||||| | || || || |||||| ||| |||| ||||| Sbjct 36798 CGAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGG 36739 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 |||| |||||||| || || ||||| || |||| | |||| ||| ||||||| || Sbjct 36738 GCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGACGAGAAAGCGCCGCTGAAGAAGATGC 36679 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 |||||||||| ||||| || ||||| |||| | || || | || ||| || ||||| Sbjct 36678 CCTCGACGGCAGCGAATGCGACCAGACGCTGCGCAAAGGTAGACTCCTTGTCGGAGATCC 36619 Query 133079 AGCGCAGCGCCCATTCGGCCTT 133100 |||| || ||||| |||||||| Sbjct 36618 AGCGAAGGGCCCAGTCGGCCTT 36597 Score = 158 bits (174), Expect = 1e-33 Identities = 201/276 (73%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 36474 GTATGTGTCGATGAGCAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 36415 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| || || || |||||| ||||| || || ||| ||||||||||| || Sbjct 36414 GCCGTAGAAACAACGGGCCTCGGGAACCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTT 36355 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||| || |||||||| ||||| || | ||| ||||| || Sbjct 36354 CTCGTTGACAATGCCATCCGACGCGGCGAAGAAGGCAAGGATGTGGGATATGAAGAACCG 36295 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||| ||| ||| | ||||||| || ||||||||||||| || | |||||| Sbjct 36294 CTCGTCATCGGTCAGGCGGTTGTTCCAGTCGTGCATGTCCTTGGACAGATCGATCTCCTC 36235 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| ||||| ||||| || || |||||||| Sbjct 36234 AGCCGTCCAGAACGAGGCCTCAGCCTTCTTGTACAT 36199 >seq204 Length=21219 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| ||||||||| | || || ||| | Sbjct 5682 AAGATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGAGC 5741 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | || || |||| ||||| ||||| || || ||||| Sbjct 5742 TCGGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 5801 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| ||||| || |||| ||||||||| ||||||| Sbjct 5802 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 5861 Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| ||| |||||||| |||||||||| || | |||||| Sbjct 5862 AACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 5912 >seq233 Length=18884 Score = 143 bits (158), Expect = 3e-29 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || |||||||| ||||| || |||||| | || || ||| | | Sbjct 2031 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 1972 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || || || | || || ||||| || ||||||| ||| Sbjct 1971 GACACGATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGCAT-CCCGCCGGACC 1914 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | |||||||| |||||||| |||| |||||||| | |||||||| Sbjct 1913 AGCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACCCTGAGCGACTACA 1854 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||||| |||||||||| ||||||| ||| || | || ||| Sbjct 1853 ACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGTGGC 1804 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || |||||||| ||||| || |||||| | || || ||| | | Sbjct 2259 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 2200 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || || || | ||||| ||||| || ||||||| ||| Sbjct 2199 GACACGATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCGGACC 2142 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | |||||||| |||||||| || | ||||| || | |||||||| Sbjct 2141 AGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACA 2082 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||||||||| ||||||| || || | ||||| Sbjct 2081 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGCGG 2033 Score = 132 bits (146), Expect = 5e-26 Identities = 165/218 (76%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || || || |||| || ||| || | Sbjct 1575 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1516 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | || |||| | || || |||| ||||| ||||| || ||||||| ||| Sbjct 1515 GACACGATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGGAT-CCCGCCGGACC 1458 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | |||||||| || | |||||||| |||||||| |||| ||| || || ||||||| Sbjct 1457 AGCAGCGGCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGGCGGACGCTGTCGGACTACA 1398 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| ||| |||||||| |||||||||| Sbjct 1397 ACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCG 1361 Score = 129 bits (142), Expect = 6e-25 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| || || || |||| || ||| || | Sbjct 1803 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1744 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || || |||| ||||| ||||| || ||||||| ||| Sbjct 1743 GACACGATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 1686 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | |||||||| |||| ||||||||| |||||||| || | ||| || || |||||||| Sbjct 1685 AGCAGCGGCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGGCGGACGCTGTCCGACTACA 1626 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||||| ||| |||||||| ||||||| ||| || | || ||| Sbjct 1625 ACATTCAGAAGGAGAGC-ACGCTGCACCTGGTGCTCCGTCTGCGCGGTGGC 1576 >seq23 Length=165582 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| |||||||| | || |||||| || | |||| | Sbjct 62004 TTCGTGAAGACCCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 62063 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCT 38371 | | | || || |||| ||||| ||||| || ||||||| |||| ||||| || Sbjct 62064 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACCAGCAGCGCCT 62122 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | || ||||| |||||||| |||| || ||||| ||||||||||||||| || Sbjct 62123 GATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAACATCCAGAA 62182 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||| ||||| ||||||||||| || | || || Sbjct 62183 GGAGTCGACTCTGCACCTGGTGCTGCGTCTGCGCGGTGG 62221 >seq34 Length=160120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 136509 GTTGCGCAGCAGCACTCGGACGATTCCGCGGTAATCGTTGTCGATCACGCCCGCGAACGC 136568 |||| |||||| || |||||| |||||||| ||| |||||| ||||| ||| | Sbjct 15540 GTTGAACAGCAGGACGCGGACGTGGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCGGT 15599 Query 136569 TTCCACGCCGTGCTTGAACGCCAGCCCCGATCTGGAGGAGATGCGGCCGTACGTGCCGGG 136628 | | | ||||||||| || || || || | | | || ||||||||||||||||| Sbjct 15600 GTTGATGGCGTGCTTGACGGCGAGGCCGGAGCGCGGCGCGACGCGGCCGTACGTGCCGGC 15659 Query 136629 CGGCAGGCAGATTATCAAGTCGGTGCTGACGCTGACGCGGCCGCCCGGCGGAATCACGGC 136688 |||| | || || ||||||| |||| | ||||||||| || || ||| || Sbjct 15660 GGGCACGGCCATGGCCAGGTCGGTGTCGACGAGGGCGCGGCCGCGCGCGGGGATCGTGGT 15719 Query 136689 CTC---CTCGGCGCTTTTCAGGTCCAGGCCGGCCGCGCCGGCCGACGCGTGCG 136738 | | | ||||| | |||||| ||||||||| |||| || || ||| Sbjct 15720 CGCGCGCGCGGCG---TACAGGTCGTAGCCGGCCGCCTCGGCGGAGCCGCGCG 15769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167148047360