Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1 194 2e-44
seq204 145 8e-30
seq233 143 3e-29
seq23 127 2e-24
seq34 87.8 2e-12
>seq1
Length=398088
Score = 194 bits (214), Expect = 2e-44
Identities = 349/502 (70%), Gaps = 10/502 (2%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || || ||||| || |||||||| || || || || || ||| ||| ||| |
Sbjct 37093 TTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 37034
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720
||| || || ||||||||| | | ||| |||| |||||| || ||
Sbjct 37033 TCCATGAAGTCAAAGGGGTTGCTCGAGCGGTACACCTTGTCGTTGCCGAG-AGAA--ACC 36977
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779
||||| | |||||||| ||||| ||||| ||| |||| | ||| | || | |||||
Sbjct 36976 AGCAGGCGATCGGCCACAAACTCAATGTACTGCTTCATGAGCGTCG-AGTTCATGCCCAG 36918
Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838
||| |||| ||||| || |||||||| || |||||||| ||| || ||| ||
Sbjct 36917 CAGGGCGCAG-GGCAGAGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGCATCGACGA 36859
Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898
||| ||| || | | ||| || || | | || ||| ||||| || ||| |
Sbjct 36858 TGATGTCCTCAATAACCTTCTTGCTGGGGCGGTTCTTCAGATGGGAGAACAGCAGGCAGG 36799
Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958
| |||||| |||| ||||||||| | || || || |||||| ||| |||| |||||
Sbjct 36798 CGAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGG 36739
Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018
|||| |||||||| || || ||||| || |||| | |||| ||| ||||||| ||
Sbjct 36738 GCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGACGAGAAAGCGCCGCTGAAGAAGATGC 36679
Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078
|||||||||| ||||| || ||||| |||| | || || | || ||| || |||||
Sbjct 36678 CCTCGACGGCAGCGAATGCGACCAGACGCTGCGCAAAGGTAGACTCCTTGTCGGAGATCC 36619
Query 133079 AGCGCAGCGCCCATTCGGCCTT 133100
|||| || ||||| ||||||||
Sbjct 36618 AGCGAAGGGCCCAGTCGGCCTT 36597
Score = 158 bits (174), Expect = 1e-33
Identities = 201/276 (73%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 36474 GTATGTGTCGATGAGCAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 36415
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| || || || |||||| ||||| || || ||| ||||||||||| ||
Sbjct 36414 GCCGTAGAAACAACGGGCCTCGGGAACCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTT 36355
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| ||||| || |||||||| ||||| || | ||| ||||| ||
Sbjct 36354 CTCGTTGACAATGCCATCCGACGCGGCGAAGAAGGCAAGGATGTGGGATATGAAGAACCG 36295
Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| ||| ||| ||| | ||||||| || ||||||||||||| || | ||||||
Sbjct 36294 CTCGTCATCGGTCAGGCGGTTGTTCCAGTCGTGCATGTCCTTGGACAGATCGATCTCCTC 36235
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| ||||| ||||| || || ||||||||
Sbjct 36234 AGCCGTCCAGAACGAGGCCTCAGCCTTCTTGTACAT 36199
>seq204
Length=21219
Score = 145 bits (160), Expect = 8e-30
Identities = 173/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || ||||||||||| ||||||||| | || || ||| |
Sbjct 5682 AAGATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGAGC 5741
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | || || |||| ||||| ||||| || || |||||
Sbjct 5742 TCGGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 5801
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| ||||| ||||| || |||| ||||||||| |||||||
Sbjct 5802 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 5861
Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||| ||||| ||| |||||||| |||||||||| || | ||||||
Sbjct 5862 AACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 5912
>seq233
Length=18884
Score = 143 bits (158), Expect = 3e-29
Identities = 173/230 (75%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || |||||||| ||||| || |||||| | || || ||| | |
Sbjct 2031 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 1972
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361
|||| | | |||| | || || || | || || ||||| || ||||||| |||
Sbjct 1971 GACACGATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGCAT-CCCGCCGGACC 1914
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| ||||| | |||||||| |||||||| |||| |||||||| | ||||||||
Sbjct 1913 AGCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACCCTGAGCGACTACA 1854
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||| || ||||| |||||||||| ||||||| ||| || | || |||
Sbjct 1853 ACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGTGGC 1804
Score = 138 bits (152), Expect = 1e-27
Identities = 171/229 (75%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || |||||||| ||||| || |||||| | || || ||| | |
Sbjct 2259 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 2200
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361
|||| | | |||| | || || || | ||||| ||||| || ||||||| |||
Sbjct 2199 GACACGATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCGGACC 2142
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || || | |||||||| |||||||| || | ||||| || | ||||||||
Sbjct 2141 AGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACA 2082
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||| ||||| |||||||||| ||||||| || || | |||||
Sbjct 2081 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGCGG 2033
Score = 132 bits (146), Expect = 5e-26
Identities = 165/218 (76%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || |||||||| || || || |||| || ||| || |
Sbjct 1575 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1516
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361
|||| | || |||| | || || |||| ||||| ||||| || ||||||| |||
Sbjct 1515 GACACGATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGGAT-CCCGCCGGACC 1458
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| |||||||| || | |||||||| |||||||| |||| ||| || || |||||||
Sbjct 1457 AGCAGCGGCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGGCGGACGCTGTCGGACTACA 1398
Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||||| ||||| ||| |||||||| ||||||||||
Sbjct 1397 ACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCG 1361
Score = 129 bits (142), Expect = 6e-25
Identities = 172/231 (74%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || |||||||| || || || |||| || ||| || |
Sbjct 1803 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1744
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361
|||| | | |||| | || || |||| ||||| ||||| || ||||||| |||
Sbjct 1743 GACACGATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 1686
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| |||||||| |||| ||||||||| |||||||| || | ||| || || ||||||||
Sbjct 1685 AGCAGCGGCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGGCGGACGCTGTCCGACTACA 1626
Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||| || ||||| ||| |||||||| ||||||| ||| || | || |||
Sbjct 1625 ACATTCAGAAGGAGAGC-ACGCTGCACCTGGTGCTCCGTCTGCGCGGTGGC 1576
>seq23
Length=165582
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| |||||||| | || |||||| || | |||| |
Sbjct 62004 TTCGTGAAGACCCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 62063
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCT 38371
| | | || || |||| ||||| ||||| || ||||||| |||| ||||| ||
Sbjct 62064 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACCAGCAGCGCCT 62122
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | || ||||| |||||||| |||| || ||||| ||||||||||||||| ||
Sbjct 62123 GATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAACATCCAGAA 62182
Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| |||| ||||| ||||||||||| || | || ||
Sbjct 62183 GGAGTCGACTCTGCACCTGGTGCTGCGTCTGCGCGGTGG 62221
>seq34
Length=160120
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/233 (69%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 136509 GTTGCGCAGCAGCACTCGGACGATTCCGCGGTAATCGTTGTCGATCACGCCCGCGAACGC 136568
|||| |||||| || |||||| |||||||| ||| |||||| ||||| ||| |
Sbjct 15540 GTTGAACAGCAGGACGCGGACGTGGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCGGT 15599
Query 136569 TTCCACGCCGTGCTTGAACGCCAGCCCCGATCTGGAGGAGATGCGGCCGTACGTGCCGGG 136628
| | | ||||||||| || || || || | | | || |||||||||||||||||
Sbjct 15600 GTTGATGGCGTGCTTGACGGCGAGGCCGGAGCGCGGCGCGACGCGGCCGTACGTGCCGGC 15659
Query 136629 CGGCAGGCAGATTATCAAGTCGGTGCTGACGCTGACGCGGCCGCCCGGCGGAATCACGGC 136688
|||| | || || ||||||| |||| | ||||||||| || || ||| ||
Sbjct 15660 GGGCACGGCCATGGCCAGGTCGGTGTCGACGAGGGCGCGGCCGCGCGCGGGGATCGTGGT 15719
Query 136689 CTC---CTCGGCGCTTTTCAGGTCCAGGCCGGCCGCGCCGGCCGACGCGTGCG 136738
| | | ||||| | |||||| ||||||||| |||| || || |||
Sbjct 15720 CGCGCGCGCGGCG---TACAGGTCGTAGCCGGCCGCCTCGGCGGAGCCGCGCG 15769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500167148047360
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