Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq376 190 3e-43 seq1 98.7 1e-15 >seq376 Length=8930 Score = 190 bits (210), Expect = 3e-43 Identities = 1004/1587 (63%), Gaps = 51/1587 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || ||| |||| ||| || || | | || || Sbjct 6865 CCCCAGCACATGATCATGCGCGTGGCGGTCGGGATCTGGGGCGACAACGTGGAGCGCGTC 6806 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||| || | |||||| | |||| ||||| | || || || ||| Sbjct 6805 CTGGAGACGTACAACTACATGTCCAACAAGTTCTTCACACACGCGTCGCCCACGCTTTTC 6746 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 |||||||| || || | |||| | | || ||||| ||| | ||||| || Sbjct 6745 AACGCTGGCACGCCCCAAGCCCAGCTCGCGTCGTGCTTCCTGGTTGACATGAAGGATGAC 6686 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849 || | ||||| |||| ||| |||| || | ||| | | ||||| ||| ||| | Sbjct 6685 AGCATTGAGGGCATCTACGACACCCTCA-AGACT-TGCGCTATGATCTCCAAGACGGCGG 6628 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTAC 111907 |||| ||||||||| || |||| || | |||| | ||| | ||| || || Sbjct 6627 GTGGCATCGGGATGAACGTCCACCGCATCCGCGCCA--CTGGCTCATACATTGCCGGCAC 6570 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || ||| ||| | || ||| | || ||||| ||||| || ||| ||| || ||||| Sbjct 6569 CAACGGTACATCCAACGGCATTGTCCCTATGCTGCGCGTGTTCAACAACACGGCCCGCTA 6510 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||| |||| | ||| ||| || ||| || ||| |||| || ||||| || Sbjct 6509 TGTGGACCAGGGTGGAAACAAGCG--GCCAGGCGCCTTCTGCA-TCTACCTGGAGCCGTG 6453 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 ||| || || | | |||||||| || |||| ||||| || | ||||||| || Sbjct 6452 GCATGCTGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCATGGCAAGGAGGAGGTACG 6393 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 |||||| || ||| || |||||||| || || || ||||||||| | || ||| | Sbjct 6392 CGCCCGCGACCTGTTCCTGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAA 6333 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || ||| | ||| | || | || || | || || ||||| |||| | || Sbjct 6332 GAACGGCGACTGGACGCTGATGTGCCCCAATGAGTGCCCGGGTCTGGCCGACTGCTACGG 6273 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGG 112260 || ||||| || ||| | ||| ||||||||| | || | || ||| || |||| Sbjct 6272 CGACGAGTTCGAGGCCTTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCGTCGC-ACGG 6214 Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | | || | || | ||||| | || | || || | || || ||||| || | || Sbjct 6213 T-CAAGGCCCAGAAGCTGTGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCG 6155 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | ||||| ||||| ||| ||| |||| ||||| || || ||||| |||| ||| Sbjct 6154 TTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 6095 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || |||||||| || ||||| || | || | | |||||| ||| ||| Sbjct 6094 CGCAGCTCCAACCTGTGCACAGAGATTATCGAGTACTGCGCGCCCGATGAGGTGGCGGTG 6035 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACATTTG 112497 || ||||| | || | || || || | |||||| | | ||| |||| | | Sbjct 6034 TGCAACCTGTCGTCGCTGGCGCTGCCGTCTTTTGTGGA--CTACGCCAACGAGACGTACG 5977 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | || || ||||| || ||| | || ||||| ||| | | || | Sbjct 5976 ACTTCCAGAAGCTTCACGAGGTCACGCAGGTGGTGGTGCGCAACCTGAACCGTATCATCG 5917 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | || | ||||| || | || || || || ||| | ||||| || || | Sbjct 5916 ACGTCAACTACTACCCTGTGCCGGAGGCGCGCAACAGCAACATGCGTCACCGGCCGATCG 5857 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-----CATTTGA 112672 || | |||||||| || | ||||||| ||| || ||| || | ||||| Sbjct 5856 GTGTGGGTGTCCAGGGCTTGGCGGATGCGTTC-----CTGGCGCTGCGGATGCCTTTTGA 5802 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || || ||| || |||| || || |||||||| || || ||||| || || Sbjct 5801 GTCGCCGGAGGCGCGTGAGCTCAACAAGCAGATCTTTGAGACGATCTACCACGCTGCGCT 5742 Query 112733 TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792 |||| | || |||| || | || || || || | ||||| ||||| Sbjct 5741 GACGGCGTCATGCGACCTGGCGAAGCTGGAGGGCGTGTACTCGACGTACGAGGGGTCTCC 5682 Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 112852 | || || || | || || |||||||||||||| | || | | | | | || Sbjct 5681 CGTGTCGCAGGGCATCCTGCAGTTTGATATGTGGGACGTCAAGCCGACGGACCTGTGGGA 5622 Query 112853 CTGGGACGC------TCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 ||||||| | ||||||| ||||||||| | || | || |||||||| || Sbjct 5621 CTGGGACTCGCTGCGTCTCAAG------ATCAAGGAGCACGGCGTGCGCAACAGTCTGTT 5568 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | |||| || ||||| || || || ||| | || ||| |||| || || |||||||| || Sbjct 5567 GGTGGCGCCGATGCCGACGGCATCGACCTCGCAGATCCTGGGCAACAACGAATGCTTCGA 5508 Query 112967 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026 || |||||| | |||||||| | | | | || || || ||||| | | ||||| Sbjct 5507 GCCATACACGTCCAACATCTACCAGCGCCGTGTGCTGGCAGGCGAGTTCCAGGTGGTCAA 5448 Query 113027 CAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 113084 | ||| || || | ||||| || || || || ||||| | | |||||| | Sbjct 5447 C--CCATGGCTTCTGAAGGACCTGGTGGACATGGGCCTGTGGTCGGACAACATGAAGAAC 5390 Query 113085 CTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAG 113144 | ||| | || ||| || || | || || || | | || || | |||||| ||| Sbjct 5389 CGCATCATTGCAGAGGGCGGGTCGGTCCAGAACATCCCGAACATCCCGGCTGAAATCAAG 5330 Query 113145 AAGTTGTACCGCACAGTTTGGGAAATC 113171 | ||||| ||||| ||||| ||| Sbjct 5329 GCGCTGTACAAGACAGTGTGGGAGATC 5303 >seq1 Length=398088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| |||| || ||||||| || || ||||| ||||||||| || | | Sbjct 36640 CCTTTGCGCAGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCTT 36699 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||| | || | ||||| |||||||| || || ||||| || || ||||||||||| Sbjct 36700 TCTCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACG 36759 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||| ||||| ||||||||||| || ||| Sbjct 36760 AGCTGATCTCGCGTGACGAGGGCCTGCAC 36788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735385610880