Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq376 183 4e-41 seq444 95.1 1e-14 >seq376 Length=8930 Score = 183 bits (202), Expect = 4e-41 Identities = 1021/1606 (64%), Gaps = 65/1606 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||| | |||||| ||||| |||||||| ||||| || |||||||| | | || | Sbjct 5234 GTTGAGCGACTGCGACTGGTCGATGAACGCGCCACGGTCGGCCGCCATCTGCACAATCGT 5293 Query 109557 ACACTTTTGGCTA-ATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 | || || | || ||||| || |||||||||| |||||| ||| | || |||| Sbjct 5294 GCGCT----GCGAGATCTCCCACACTGTCTTGTACAGCGCCTTGATTTCAGCCGGGATGT 5349 Query 109616 CCACGATGTTTTGAATAGAGCCACCAGCCTTCACCA----TGAGATCCTTCATCTCTTTC 109671 | |||||| || || | ||| ||| || || || | | |||||| | | | Sbjct 5350 TCGGGATGTTCTG----GACCGACCCGCCCTCTGCAATGATGCGGTTCTTCATGTTGTCC 5405 Query 109672 GACCAGAGACCGACCTTTTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATT 109729 ||||| || || | | || || | | ||| ||| ||||||||| || | Sbjct 5406 GACCACAGGCCCATGTCCACCAGGTCCTTCAGAAGCCATGG--GTTGACCACCTGGAACT 5463 Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789 | || || || || || |||||||||| | |||||| || ||||| || || |||| Sbjct 5464 CGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGAAGCATTCGTTGT 5523 Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 |||| ||||| || | || || || || ||||| || |||| | |||||||| || | Sbjct 5524 TGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAACAGACTGTTGCGCA 5583 Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATA-ACGACCACTAAATTTA 109908 || | | ||| | | ||||| | |||||| || | | | || | Sbjct 5584 CGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCCAGTCCCACAGGTCCG-------TC 5636 Query 109909 GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAA 109968 | || | ||||||||||| || || | |||| | | ||||| |||| | | Sbjct 5637 GGCTTGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAGACCCCTCGTAC 5696 Query 109969 CTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATAC 110028 || |||| ||||| | || |||| ||| |||| ||| || || || || || Sbjct 5697 GTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGCATGACGCCGTCAGCGCAGCGTGGTAG 5756 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085 || |||||||| || || || |||| || | ||| | || || || | Sbjct 5757 ATCGTCTCAAAGATCTGC---TTGTTGAGCTCACGCGCCTCCGGCGACTCAAAAGGCAT- 5812 Query 110086 CCACAAAGA-ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 || || | | ||| ||||||| | ||||| ||||| | ||| || || || || Sbjct 5813 CCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGGCCGGTGACG 5872 Query 110145 CATGTTAGAGC-GTCGAGCAGTTTCT--ACGGGGTAAAAGTTGCGGTCGATGACCCGATT 110201 |||||| || || | || | | || ||||| ||||| |||||||| || || Sbjct 5873 CATGTT---GCTGTTGCGCGCCTCCGGCACAGGGTAGTAGTTGACGTCGATGATACGGTT 5929 Query 110202 GAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGT 110261 || || | ||| || ||||| || || || || | | | ||| |||| | ||| Sbjct 5930 CAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGTCGTACGTCT-CGT 5988 Query 110262 CTCCTTATTG-ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGT 110320 | || | ||| | || || || | |||| || |||||||| | ||| | Sbjct 5989 TGGCGTAGTCCACAAAAGACGGCAGCGCCAGCGACGACAGGTTGCACACCGCCACCTCAT 6048 Query 110321 CTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGT 110380 | || ||| || | ||| || || |||| |||||| || ||| |||| || Sbjct 6049 CGGGCGCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGT 6108 Query 110381 TCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTT 110440 ||||||| || ||| |||||| ||||| || |||||| | ||| | || || | Sbjct 6109 TCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCGGTCT 6168 Query 110441 CCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCG 110499 ||||||| | || || | ||| | ||| | | || | ||| ||| || ||| || Sbjct 6169 CCGTCTGCGCCTCCAGGACGGCATACCACAGCTTCTG-GGCCTTGACCGT-GCGACGGCC 6226 Query 110500 A-GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGA 110558 | | || |||| ||||||||| ||||||| |||| || || | ||||| || | Sbjct 6227 ACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCGTAGCAGTCGGC 6286 Query 110559 AAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTT 110618 |||||| || | ||| || | || | ||| | || || ||| || | ||| Sbjct 6287 CAGACCCGGGCACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTT 6346 Query 110619 CATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATC 110678 |||||||||||| || ||||| | |||| ||| ||||| ||| || |||| || | Sbjct 6347 CATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTT 6406 Query 110679 ACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA 110738 || ||||| ||| || || | || || | | || | ||||| || || || || Sbjct 6407 GCCATGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTA 6466 Query 110739 GA--CA----GCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792 || || ||| | | ||| | || |||||| |||||||| || ||| Sbjct 6467 GATGCAGAAGGCGCCTGGCCGCTTGTTTCCAC---CCTGGTCCACATAGCGGGCCGTGTT 6523 Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852 ||||| || | |||||||| | ||| || | |||| ||| || || || ||| Sbjct 6524 GTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTA 6583 Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912 || | |||| || ||| ||||| | ||| || || ||||||||| ||| || Sbjct 6584 TGAGCCAGTGGCGCGGATGCGGTGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGAT 6643 Query 110913 --TTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCA 110970 | | ||| | ||| |||| || | || || || ||||| || |||| || || Sbjct 6644 CATAGCGCA-AGTCT-TGAGGGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCA 6701 Query 110971 ATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTC 111030 | || ||||| || | | ||| | | ||||| || || ||||| || || || | | Sbjct 6702 ACCAGGAAGCACGACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGAC 6761 Query 111031 GCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074 || || ||| ||| |||| |||||| | |||||| || || || Sbjct 6762 GCGTGTGTGA--AGAACTTGTTGGACATGTAGTTGTACGTCTCCAG 6805 >seq444 Length=208719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 250/375 (67%), Gaps = 14/375 (4%) Strand=Plus/Minus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| ||| |||||||| || || || | |||||| | |||| || ||||| |||||| Sbjct 204437 TGTTGAAGCCGTCCATCTCCGTCAGGATCTGGTTCAGCGTCGCCTCGCGCTCGTCGTTGC 204378 Query 11648 AGG----GCATACCA---CCT-GCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGAT 11699 | || | | ||| |||| ||| | |||| ||||| ||||| ||||| Sbjct 204377 CGCCCGAGCTGAACTTGCCCTCGCCG--CGCGACCGGCCGATCGCGTCGATCTCGTCGAT 204320 Query 11700 GAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGC 11759 ||| | ||| ||||| | || ||| | || || || || || ||| ||| Sbjct 204319 GAAAATGATGCACGGCGCACTCTTGCGCGCCGTCGCAAACAGATCGCGCACCCGCGACGC 204260 Query 11760 TCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACA 11817 || || || || |||||||| || || | | | || || | ||||| ||| || || Sbjct 204259 GCCCACGCCCACAAACATCTCCACAAACTCCGACCCGCTGA-CGCTGAA-GAACGGCACC 204202 Query 11818 TTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCG 11877 ||||| || || |||| || || || ||||| |||||||| |||| || || Sbjct 204201 CCCGACTCGCCGGCCGTGGCCTTGGCCAGCAGCGTCTTGCCCGTACCCGGTGGCCCGGCC 204142 Query 11878 AGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGG 11937 || | ||||| || |||||||||||||| | | ||||||| |||| ||| ||| Sbjct 204141 AGGATCGCGCCGCGCGGGATCTTGGCACCCAGCCGCTGGAAGCGCTCCGGCTGCTTCAGG 204082 Query 11938 AAGTCCACAATCTCC 11952 ||| ||||| |||| Sbjct 204081 AAGCTCACAAACTCC 204067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969344571200