Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq376 181 1e-40 >seq376 Length=8930 Score = 181 bits (200), Expect = 1e-40 Identities = 1111/1750 (63%), Gaps = 55/1750 (3%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCA-CGCGTACATATGCATAGAAGA 105648 || || |||||||| |||||||||||||| ||||| | |||| | |||||| | Sbjct 5142 CGCAGGTAGTACATACCGGTCTTGAGTCCCAACTTCCAGCCCGTAAA-ATGCATGCTGGT 5200 Query 105649 GAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATG 105706 | |||| ||| || || |||| || || | ||| |||| |||| ||| Sbjct 5201 AATCTTGCCCATAGTCGGTGCGCGCATGTGAATGTTGAGCGACTGCGACT--GGTCGATG 5258 Query 105707 AA-GCGACCACGTTGTGCCGCCATAT---CAATGACATCCTTCATCTTGATTTCCCACAC 105762 || ||| ||||| | |||||||| | |||| | | | | | ||| |||||||| Sbjct 5259 AACGCG-CCACGGTCGGCCGCCATCTGCACAAT--CGTGCG-CTGCGAGATCTCCCACAC 5314 Query 105763 TGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCC 105822 ||| ||| || |||||| ||| | ||||| | | ||| || || | || || || Sbjct 5315 TGTCTTGTACAGCGCCTTGATTTCAGCCGGGATGTTCGGGATGTTCTGGACCGACCCGCC 5374 Query 105823 CGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATT 105882 | | | ||| | | |||||| | | ||||| || || || | | || || || Sbjct 5375 CTCTGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTT 5434 Query 105883 GACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATG 105940 | || ||| |||||| | | ||||| || || || | | | | |||||| Sbjct 5435 CAGAAGCCATGG--GTTGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATG 5492 Query 105941 TTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTT 106000 || | |||||| || || |||||||| || || |||| ||| || | ||| || || || Sbjct 5493 TTGGACGTGTATGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTC 5552 Query 106001 GGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGA 106060 ||||| || |||| ||| |||||||| || | || | |||||||| ||||||| Sbjct 5553 GGCATCGGCGCCACCAACAGACTGTTGCGCACGCCGTGCTCCTTGAT------CTTGAGA 5606 Query 106061 A-CA-----TCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATATCAAATTGAAG 106113 || |||||||| | | | | || || || | ||||||||||||| || || Sbjct 5607 CGCAGCGAGTCCCAGTCCCACAGGTCCGTCGGCTTGACGT-CCCACATATCAAACTGCAG 5665 Query 106114 CACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGG-GCTTCAGCCA 106172 | || || ||| |||||| ||||| | ||| || || | ||||| |||| Sbjct 5666 GATGCCCTGCGACACGGGAGACCCCTCGTACGTCGAGTACACGCCCTCCAGCTTC-GCCA 5724 Query 106173 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 || || |||| ||| | ||||| || || || |||||||| | || | || Sbjct 5725 GGTCGCATGACGCCGTCAGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCT 5784 Query 106233 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCT 106291 | || || || ||||| | | | | ||| | | || ||||||| | || Sbjct 5785 CACGCGCCTCCGGCGACTCAAAAG-GCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCC 5843 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351 || ||||||| ||| || || | ||| ||||| || || ||||| | || || Sbjct 5844 TGGACACCCACACCGATCGGCCGGTGACGCATGTTGCTGTTGCGCGCCTCCGGCACAGGG 5903 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 106411 || | || ||| |||| ||||| || || || | || |||| || ||| Sbjct 5904 TAGTAGTTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGA 5963 Query 106412 AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGAT 106471 || || | | || | || | | | | ||| | || || || | || Sbjct 5964 AGCTTCTGGAAGTCGTACGTCTCGTTGGCGTAGTCCACAAAAGACGGCAGCGCCAGCGAC 6023 Query 106472 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAG 106531 | || ||||| || ||| |||||| | |||||| | ||| ||||| |||| | Sbjct 6024 GACAGGTTGCACACCGCCACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCACAGG 6083 Query 106532 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTG 106591 ||||| || || || |||| ||||| ||||| ||||| |||||| |||||| Sbjct 6084 TTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTG 6143 Query 106592 TAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATC 106650 || |||||| | || | || ||||||||||| | || || | || | ||||| | || Sbjct 6144 TACAGCATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACAGCTTC 6203 Query 106651 GGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709 | | || | || | ||| |||| || |||||| ||||||||| ||| | ||| | Sbjct 6204 TGGGCCTTG-ACCGT-GCGACGGCCACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCT 6261 Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 106769 | ||||| || || ||||| ||||| || || | || || | || | || Sbjct 6262 CGAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCC 6321 Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829 | | || || ||| || ||||||||||| ||||| || ||||| || | || | Sbjct 6322 AGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACA 6381 Query 106830 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 106889 | || | || |||| || | || ||||| || | || |||||||| | | Sbjct 6382 GGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAACA 6441 Query 106890 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 106943 || || ||||| ||||| || |||| ||| || || | | ||| ||| Sbjct 6442 CGTCAGCATGCCACGGCTCCAGGTAGA-TGCAGAAGGCGCC--TGGCCGCTTGTTTCCAC 6498 Query 106944 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 107003 | || | |||||||| || ||| ||| || ||||| ||||| || | ||| || | | Sbjct 6499 CCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGG 6558 Query 107004 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 107063 || ||| || || || ||| || | |||| | | |||| || ||||| Sbjct 6559 ATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCATCC 6618 Query 107064 CAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACC 107121 | || || || ||| ||| ||||| | ||||| | | | | || || | ||||| || Sbjct 6619 CGATGCCACCCGCCGTCTTGGAGATCATAGCGCA-AGT-CTTGAGGGTGTCGTAGATGCC 6676 Query 107122 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 107181 | || ||| ||||| || | | |||||||| | | ||| | | || || Sbjct 6677 CTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCTGGGCTTGGGGCGT 6736 Query 107182 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGT 107240 ||||| ||||| || || || | ||||| |||| | || | | |||||| | || || Sbjct 6737 GCCAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGT 6795 Query 107241 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACA 107300 | ||||||| ||| || | || || || ||| |||| ||||| ||||| | || Sbjct 6796 ACGTCTCCAGGACGCGCTCCACGTTGTCGCCCCAGATCCCGACCGCCACGCGCATGATCA 6855 Query 107301 TGTATTGGGG 107310 ||| ||||| Sbjct 6856 TGTGCTGGGG 6865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974133216960