Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq233 125 5e-24 seq204 109 4e-19 seq23 86.0 4e-12 >seq233 Length=18884 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||| || || || |||| ||| | ||||| || ||||| ||||| |||||||| Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || |||||||| || || ||||| || || || |||||||| |||| Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||||||| |||||| |||||| | |||| || | | ||| || Sbjct 1469 ATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCGCTGCTCTCCACC 1528 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || || || ||||| || ||||| || ||||||||||| Sbjct 1529 TCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||||||||| ||||| || || | || |||| ||| Sbjct 1595 ACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCCTCC 1654 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| |||| | ||||||||||| Sbjct 1655 AGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 1714 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | |||| || | | ||| || |||| || || || || Sbjct 1715 ATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCTTG 1774 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||| |||||||||||||| Sbjct 1775 CCCGTCAGGGTCTTGACAAAGATCTGCAT 1803 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| ||| | || | || |||||||| || || ||||| Sbjct 1841 TCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 1900 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||| || ||||||| |||||| Sbjct 1901 ATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTCGACTTGACGTTG 1960 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || || | ||| || || || || ||||| ||||| || Sbjct 1961 TCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACG 2020 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 2021 AAGATTTGCATA 2032 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || |||| |||||||| || || ||||| Sbjct 2069 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAG 2128 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||||| |||||| Sbjct 2129 ATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 2188 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || || | ||| || || || || ||||| ||||| || Sbjct 2189 TCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACG 2248 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 2249 AAGATTTGCAT 2259 >seq204 Length=21219 Score = 109 bits (120), Expect = 4e-19 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 5893 ACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 5834 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | ||||||||||| Sbjct 5833 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 5774 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| | ||| || ||| || || | ||| ||||| Sbjct 5773 ATCTTGGACTTGAC--AT--TGTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTGATGGT 5718 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| ||||| || ||||||||||| || Sbjct 5717 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682 >seq23 Length=165582 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 62185 TCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAG 62126 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| ||||| Sbjct 62125 ATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 62066 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || || | || ||||| || ||||| || |||||||| Sbjct 62065 TCGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCACG 62006 Query 34971 AA 34972 || Sbjct 62005 AA 62004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630023349312