Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq233 125 5e-24
seq204 109 4e-19
seq23 86.0 4e-12
>seq233
Length=18884
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| |||| || || || |||| ||| | ||||| || ||||| ||||| ||||||||
Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || | || |||||||| || || ||||| || || || |||||||| ||||
Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| |||||||||||| |||||| |||||| | |||| || | | ||| ||
Sbjct 1469 ATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCGCTGCTCTCCACC 1528
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||| || || || || ||||| || ||||| || |||||||||||
Sbjct 1529 TCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||||| || ||||||||||| ||||| || || | || |||| |||
Sbjct 1595 ACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCCTCC 1654
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || |||||||| |||| | |||||||||||
Sbjct 1655 AGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 1714
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| |||||| | |||| || | | ||| || |||| || || || ||
Sbjct 1715 ATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCTTG 1774
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || ||||| ||||||||||||||
Sbjct 1775 CCCGTCAGGGTCTTGACAAAGATCTGCAT 1803
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| ||| | || | || |||||||| || || |||||
Sbjct 1841 TCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 1900
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | |||||||| || ||||||| ||||||
Sbjct 1901 ATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTCGACTTGACGTTG 1960
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | ||| || || | ||| || || || || ||||| ||||| ||
Sbjct 1961 TCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACG 2020
Query 34971 AAGATCTGCATA 34982
||||| ||||||
Sbjct 2021 AAGATTTGCATA 2032
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || | || |||| |||||||| || || |||||
Sbjct 2069 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAG 2128
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | ||||||||||| ||||||| ||||||
Sbjct 2129 ATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 2188
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | ||| || || | ||| || || || || ||||| ||||| ||
Sbjct 2189 TCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACG 2248
Query 34971 AAGATCTGCAT 34981
||||| |||||
Sbjct 2249 AAGATTTGCAT 2259
>seq204
Length=21219
Score = 109 bits (120), Expect = 4e-19
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||||| || ||||| ||||| ||||| || ||| | || | || ||
Sbjct 5893 ACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 5834
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || |||||||| |||| | |||||||||||
Sbjct 5833 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 5774
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| | ||| || ||| || || | ||| |||||
Sbjct 5773 ATCTTGGACTTGAC--AT--TGTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTGATGGT 5718
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| |||||||| ||||| || ||||||||||| ||
Sbjct 5717 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682
>seq23
Length=165582
Score = 86.0 bits (94), Expect = 4e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| | || | || |||||||| || || |||||
Sbjct 62185 TCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAG 62126
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | ||||||||||| ||||| |||||
Sbjct 62125 ATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 62066
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || || ||| || || | || ||||| || ||||| || ||||||||
Sbjct 62065 TCGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCACG 62006
Query 34971 AA 34972
||
Sbjct 62005 AA 62004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324630023349312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |