Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq226 98.7 8e-16
seq896 87.8 1e-12
seq34 87.8 1e-12
>seq226
Length=19278
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 29761 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCC 29820
|| ||||||||||| | |||| | | | ||||| ||| | || ||||| ||
Sbjct 16518 AGGGTGGGAAAGGGGCGGGGCGCGCGCGTCAGCTGGACGCGCAGGGCGTCGACGTGGTCG 16577
Query 29821 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29880
||||||||| ||||| || ||| |||| | | || || | || ||| ||||
Sbjct 16578 GCGTAGACGTGGGCGTCGCCGAGGACGTGGGTCAGCGAGCCGGGGACGAGGCCGCAGACG 16637
Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940
| || | ||||| ||||| || | ||||||||| ||||| ||||| || ||||| |||
Sbjct 16638 CGGGCGAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCCC 16697
Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACA 29969
||||| | || | |||||||||||| ||
Sbjct 16698 ATGTCGCAGGAGCGCTGGTAGAGCTGGCA 16726
>seq896
Length=67886
Score = 87.8 bits (96), Expect = 1e-12
Identities = 130/180 (72%), Gaps = 6/180 (3%)
Strand=Plus/Minus
Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCG-T 52074
|||||||||| || || |||| ||| | ||| |||| ||||||||||||||||||
Sbjct 56487 CGTCAAGGTGCGGGTGCGGACGACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCGCG 56428
Query 52075 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52132
||||| || ||||| ||| || | | ||| | | | |||||||||||| |||
Sbjct 56427 GCACGG-ACAGAAGGGTACGATTGGTGTGACGTACCGGTC--GGAGGACATGCCGTTCAC 56371
Query 52133 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGAC 52192
| ||| || | ||| ||| ||||||||||||| |||||| | || || | |||||
Sbjct 56370 GACGGAGGGCATCACGCCGGACATCATCATCAACCCGCACGCCATCCCGTCGCGCATGAC 56311
>seq34
Length=160120
Score = 87.8 bits (96), Expect = 1e-12
Identities = 183/273 (67%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 48362 CTCGAGCACGAGCTGGGCTATCCTGTCACCCCTCTCGACCCGAAAGGGGTTGCACCCAAA 48421
|||||||||||||||||| || | ||| || | |||| |||| | | ||
Sbjct 15480 CTCGAGCACGAGCTGGGCGATGCGGTCGCCGGGCGCGACGGCAAAGTCGGCGTCGCCGTG 15539
Query 48422 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 48481
||| ||||| | ||||| || || ||| | |||||||| ||| | || ||||| |||
Sbjct 15540 GTTGAACAGCAGGACGCGGACGTGGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCGGT 15599
Query 48482 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 48541
|| || | || | ||| |||||||| | || || || | |||||| ||| |
Sbjct 15600 GTTGATGGCGTGCTTGACGGCGAGGCCGGAGCGCGGCGCGACGCGGCCGTACGTGCCGGC 15659
Query 48542 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCACGAC 48601
||||| || ||||||||| || | || ||||| | |||| | ||||| | |
Sbjct 15660 GGGCACGGCCATGGCCAGGTCGGTGTCGACGAGGGCGCGGCCGCGCGCGGGGATCGTGGT 15719
Query 48602 CGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGC 48634
|| | | ||||| ||||||||| || || ||
Sbjct 15720 CGCGCGCGCGGCGTACAGGTCGTAGCCGGCCGC 15752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408613098055592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |