Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq226 98.7 8e-16 seq896 87.8 1e-12 seq34 87.8 1e-12 >seq226 Length=19278 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29761 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCC 29820 || ||||||||||| | |||| | | | ||||| ||| | || ||||| || Sbjct 16518 AGGGTGGGAAAGGGGCGGGGCGCGCGCGTCAGCTGGACGCGCAGGGCGTCGACGTGGTCG 16577 Query 29821 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29880 ||||||||| ||||| || ||| |||| | | || || | || ||| |||| Sbjct 16578 GCGTAGACGTGGGCGTCGCCGAGGACGTGGGTCAGCGAGCCGGGGACGAGGCCGCAGACG 16637 Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 | || | ||||| ||||| || | ||||||||| ||||| ||||| || ||||| ||| Sbjct 16638 CGGGCGAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCCC 16697 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 ||||| | || | |||||||||||| || Sbjct 16698 ATGTCGCAGGAGCGCTGGTAGAGCTGGCA 16726 >seq896 Length=67886 Score = 87.8 bits (96), Expect = 1e-12 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCG-T 52074 |||||||||| || || |||| ||| | ||| |||| |||||||||||||||||| Sbjct 56487 CGTCAAGGTGCGGGTGCGGACGACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCGCG 56428 Query 52075 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52132 ||||| || ||||| ||| || | | ||| | | | |||||||||||| ||| Sbjct 56427 GCACGG-ACAGAAGGGTACGATTGGTGTGACGTACCGGTC--GGAGGACATGCCGTTCAC 56371 Query 52133 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGAC 52192 | ||| || | ||| ||| ||||||||||||| |||||| | || || | ||||| Sbjct 56370 GACGGAGGGCATCACGCCGGACATCATCATCAACCCGCACGCCATCCCGTCGCGCATGAC 56311 >seq34 Length=160120 Score = 87.8 bits (96), Expect = 1e-12 Identities = 183/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 48362 CTCGAGCACGAGCTGGGCTATCCTGTCACCCCTCTCGACCCGAAAGGGGTTGCACCCAAA 48421 |||||||||||||||||| || | ||| || | |||| |||| | | || Sbjct 15480 CTCGAGCACGAGCTGGGCGATGCGGTCGCCGGGCGCGACGGCAAAGTCGGCGTCGCCGTG 15539 Query 48422 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 48481 ||| ||||| | ||||| || || ||| | |||||||| ||| | || ||||| ||| Sbjct 15540 GTTGAACAGCAGGACGCGGACGTGGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCGGT 15599 Query 48482 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 48541 || || | || | ||| |||||||| | || || || | |||||| ||| | Sbjct 15600 GTTGATGGCGTGCTTGACGGCGAGGCCGGAGCGCGGCGCGACGCGGCCGTACGTGCCGGC 15659 Query 48542 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCACGAC 48601 ||||| || ||||||||| || | || ||||| | |||| | ||||| | | Sbjct 15660 GGGCACGGCCATGGCCAGGTCGGTGTCGACGAGGGCGCGGCCGCGCGCGGGGATCGTGGT 15719 Query 48602 CGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGC 48634 || | | ||||| ||||||||| || || || Sbjct 15720 CGCGCGCGCGGCGTACAGGTCGTAGCCGGCCGC 15752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408613098055592