Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq233 111 1e-19
seq204 100 2e-16
seq23 82.4 6e-11
>seq233
Length=18884
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| |||| ||||||| ||||| || ||||||||||| || || || ||||| || ||
Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || |||| |||| |||||| || ||||| ||||| ||||| || |||| ||
Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC-CTCCAC 48718
| ||||||||||| ||||| || || | | | || | || ||||||
Sbjct 1469 ATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTGTC-GCTGCTCTCCAC 1527
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | ||||||||| || ||||||| || || || || ||||||||
Sbjct 1528 CTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575
Score = 104 bits (114), Expect = 2e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || ||||||||||| || ||||| ||||| || || || | ||
Sbjct 1586 AGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGC 1645
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| || || || ||||| ||||| || |||| || | |||||||
Sbjct 1646 CCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCC 1705
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC-CTCCACCTCCACCGT 48727
||||| ||||| || || | | | || | || ||||||||| | |||
Sbjct 1706 TTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTC-GCTGCTCTCCACCTCGAGCGT 1764
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| || ||||||| || || ||||| ||||||||
Sbjct 1765 AATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || ||||| ||| || ||||| ||||| || || | |||
Sbjct 1814 AGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGA 1873
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| || ||||| || || ||||| || |||| || | |||||||
Sbjct 1874 CCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1933
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || |||||| || || | | | || |||| ||||||||||| ||
Sbjct 1934 TTATCCTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTG 1993
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || | || || || || || |||||
Sbjct 1994 ATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
>seq204
Length=21219
Score = 100 bits (110), Expect = 2e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
||||||| | || |||| ||||| || ||||||||||| || || || ||||| || |
Sbjct 5913 CGCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGG 5854
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || |||| || | |||||| ||||| || ||||| ||||| || || | |
Sbjct 5853 AGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCG 5794
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | |||||||||||| ||||| || ||| | | | || || |||||
Sbjct 5793 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCA 5734
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||| | || || || || ||||| | || || || || ||||||||| ||
Sbjct 5733 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 5681
>seq23
Length=165582
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||| || || || ||| || || || ||||| || || || | ||
Sbjct 62212 AGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGG 62153
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| || ||||| ||||| ||||| || |||| || | |||||||
Sbjct 62152 CCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 62093
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||||| ||
Sbjct 62092 TTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTG 62033
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758
|| || || ||||||| || || || |||
Sbjct 62032 ATGGTCTTGCCCGTCAGGGTCTTCACGAAA 62003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380933403019992
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