Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq376 535 8e-147 seq1 212 1e-49 >seq376 Length=8930 Score = 535 bits (592), Expect = 8e-147 Identities = 1176/1732 (68%), Gaps = 59/1732 (3%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| || ||||| |||||| ||||| | | | | ||| || ||||| | | || Sbjct 5234 GTTGAGCGACTGCGACTGGTCGATGAACGCGCCACGGTCGGCCGCCATCTGCACAATCGT 5293 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | ||| |||| ||||||||| |||||| | | | |||| || | |||| | || Sbjct 5294 GCGCTGCGAGATCTCCCACACTGTCTTGTACAGCGCCTTGATTTCAGCCGGGATGTTCGG 5353 Query 212816 GATGTTCTGCACAGACCC--CCTGTGTA-TGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 ||||||||| || ||||| ||| || | || | | | | ||||| || ||| Sbjct 5354 GATGTTCTGGACCGACCCGCCCTCTGCAATGATGCGGTTCTT---CATGTTGTCCGACCA 5410 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 |||||| || | ||||| ||| | || |||||||| | |||||| || |||| Sbjct 5411 CAGGCCCATGTCCACCAGGTCCTTCAGAAGCCATGGGTTGACCACCTGGAACTCGCCTGC 5470 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||||| | | |||||| | ||| || ||||| ||||||| || |||||||| ||||| Sbjct 5471 CAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGAAGCATTCGTTGTTGCCCAG 5530 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 ||||| | || || || ||||| || ||||||| |||||||| | ||| ||||| Sbjct 5531 GATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAACAGACTGTTGCGCACGCCGTG 5590 Query 213053 CTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCC-TCGTCCT 213111 ||| ||| | | || ||| |||||||||| ||||||| ||| | | Sbjct 5591 CTCCTTGATCTTGAGACGCAGCGAGTCCCAGTCCCA---------CAGGTCCGTCGGC-T 5640 Query 213112 TCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGG 213171 | |||| |||||| |||||||||| |||||| | |||||| |||| ||| | | Sbjct 5641 TGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAGACCCCTCGTACGTCG 5700 Query 213172 AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGG 213231 |||| ||| | | ||| ||||| ||||| |||||| ||| ||||||| |||||| | Sbjct 5701 AGTACACGCCCTCCAGCTTCGCCAGGTCGCATGACGCCGTCAGCGCAGCGTGGTAGATCG 5760 Query 213232 TTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGC 213291 | ||||| |||| | ||||||||| ||||| || ||| || |||||| || || Sbjct 5761 TCTCAAAGATCTGCTTGTTGAGCTCACGCGCCTCCGGCGACTCAAAAGGCATCCGCA-GC 5819 Query 213292 GTT-GGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTA 213350 | ||||| |||| |||| |||||||| || | ||||| || | ||| | || ||| Sbjct 5820 GCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGGCCGGTGACGCATGTTG 5879 Query 213351 GACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCG 213409 ||| | || |||| || ||||| ||||| ||||||||| ||| |||||||| Sbjct 5880 CTGTTGCGCGC-CTCCGGCACAGGGTAGTAGTTGACGTCGATGATACGGTTCAGGTTGCG 5938 Query 213410 GGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG 213469 |||| | ||||| | | || | || | | | || | | ||| | Sbjct 5939 CACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGTCGTACGTCTCGTTGGCGTAGTC 5998 Query 213470 CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGT 213529 |||||| ||||| || | | ||||||||| || |||||||| | | | Sbjct 5999 CACAAAAGACGGCAGCGCCAGCGACGACAGGTTGCACACCGCCACCTCATCGGGCGCGCA 6058 Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| || ||||| |||||||||||| || ||||||||||||||||||| ||||| Sbjct 6059 GTACTCGATAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTT 6118 Query 213590 TGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 ||| ||| | |||| |||||||| |||||| | ||| |||||||| ||| | Sbjct 6119 GCTCTT-GCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTCTGCG 6177 Query 213649 ACACCAGTATCTGGCT-CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGC 213707 | |||| | | | | ||| || | | |||||||||| || | | || || | Sbjct 6178 CCTCCAGGA-CGGCATACCACAGCTTCTGGGCCTTGACCGTGCGACGGCCACGGCCCTCC 6236 Query 213708 GTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCC 213767 | |||||||| ||||| | | | ||| |||| ||| || | |||| ||| Sbjct 6237 TT---CTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCGTAGCAGTCGGCCAGACCC 6293 Query 213768 GGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAA 213826 || || ||| ||||| || ||||||| |||| | |||| || | || |||||| Sbjct 6294 GGGCACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCTCC-ACACGCTTCATGAA 6352 Query 213827 CAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGA 213886 ||||||||||| ||| ||||| ||||||||| | || | ||| ||| ||| Sbjct 6353 CAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTGCCATG 6412 Query 213887 GTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGC 213946 ||| |||||||| || || || || || | ||| || ||||||||||||| ||||||| Sbjct 6413 GTTCTTGCGCAGGTCGAGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGATGCA 6472 Query 213947 AAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGAT 214003 |||||||| |||| |||| || ||||||||||| | |||| ||||||| | Sbjct 6473 GAAGGCGCCTGGCCGCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTGTTGTTGAACAC 6532 Query 214004 GCGCAGGACGGGTACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGG 214062 |||||| | || || | |||||||| ||| |||||||| || || || || ||||| | Sbjct 6533 GCGCAGCATAGGGACAATGCCGTTGGA-TGTACCGTTGGTGCCGGCAATGTATGAGCCAG 6591 Query 214063 AGGCCCTCAGGTTGCTCATGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATG 214118 ||| | || ||| |||| | ||| |||||||| || |||||||||||| Sbjct 6592 TGGCGC---GGATGC-GGTGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATA 6647 Query 214119 GCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAG 214178 ||||| | | | || || |||||| | ||||||||||| | | || | || | Sbjct 6648 GCGCAAGTCTTGAGGGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAGG 6707 Query 214179 AAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGG 214238 ||||| || |||||||| || || ||||| ||||||||||||||| || || Sbjct 6708 AAGCACGACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTGT 6767 Query 214239 ATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAG----GGGATGTCGTG 214294 | | |||||||| || | | |||| ||||||||||| | | | ||||| Sbjct 6768 GTGAAGAACTTGTTGGACATGTAGTTGTACGTCTCCAGGAC-GCGCTCCACGTTGTCGCC 6826 Query 214295 CTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCT---CTATGGGTC 214350 | |||| | || ||| | ||| | |||||||||||||| || | || | Sbjct 6827 C---CAGATCCCGACCGC-CACGCGCATGATCATGTGCTGGGGCCGCTCAACGATCTTGC 6882 Query 214351 CTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 | ||| | ||| |||||||| || |||||||| |||||||| |||||||| Sbjct 6883 CGTTGAG---CTTAAGCAGGTACGAACGCTCCAGCGTCTTGAAGCCAAAGTA 6931 >seq1 Length=398088 Score = 212 bits (234), Expect = 1e-49 Identities = 361/517 (70%), Gaps = 11/517 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | |||||||||||||| ||||| || ||| ||||||||||| Sbjct 37091 CTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 37032 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||| | | |||||| |||| ||| | |||||| Sbjct 37031 CATGAAGTCAAAGGGGTTGCTCGAGCGGTACACCT-TGTCGTTGCCGAGAGAAACCAGCA 36973 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || |||| || || |||| ||||| | |||||| || ||||||||| | |||| Sbjct 36972 GGCGATCGGCCACAAACTCAATGTACTGCTTCATGAGCGTCGAGTTCATGCCCAGCAGGG 36913 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| ||||| ||||| ||||||| ||| |||| ||||| || | | || | Sbjct 36912 CGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGCATCGACGATGATGT 36853 Query 48078 GCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || || ||| || | || || ||| || || | |||| ||||| Sbjct 36852 CCTCAATAACCTTCTTGCTGGGGCGGTTCTT---CAGATG---GGAGAACAGCAGGCAGG 36799 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||||| ||| ||||| || ||| ||| ||||||||||| || || | Sbjct 36798 CGAAGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGG 36739 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || || |||||||| || | || ||||| ||| ||||||||||| Sbjct 36738 GCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGACGAGAAAGCGCCGCTGAAGAAGATGC 36679 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| ||| || | || | || | || | |||||| ||||||| Sbjct 36678 CCTCGACGGCAGCGAATGCGACCAGACGCTGCGCAAAGGTAGACTCCTTGTCGGAGATCC 36619 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || ||| |||||||| |||||||| |||||| || Sbjct 36618 AGCGAAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGG 36582 Score = 87.8 bits (96), Expect = 3e-12 Identities = 171/251 (68%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||||||||| | ||||| || ||||||||| |||||||| | |||||| | Sbjct 36448 TCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAACAACGGGCCTCGGGAA 36389 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || | ||| | ||| | ||| ||||| ||||| || ||||| || || | Sbjct 36388 CCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCCGACGCGG 36329 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTC 48604 | ||||||||||||| || | ||| ||||||| | ||| || || ||| Sbjct 36328 CGAAGAAGGCAAGGATGTGGGATATGAAGAACCGCTCGTCATCGGTCAG-GCGGTTGTTC 36270 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | || | ||| ||| ||| || | || || | |||||||| || || || Sbjct 36269 CAGTCGTGCATGTCCTTGGACAGATCGATCTCCTCAGCCGTCCAGAACGAGGCCTCAGCC 36210 Query 48665 TTTTTGTACAT 48675 || |||||||| Sbjct 36209 TTCTTGTACAT 36199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931522273679360