Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq376 336 4e-87 seq1 149 1e-30 >seq376 Length=8930 Score = 336 bits (372), Expect = 4e-87 Identities = 1034/1591 (65%), Gaps = 86/1591 (5%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGA----CCATGTGCTTGTTCA 221120 ||| | ||||| ||| || ||| | || |||| |||| | ||||| | || | Sbjct 5396 CATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTTCAGAAGCCATGGG----TTGA 5451 Query 221121 CCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGA 221180 |||| ||||| || || | ||||| | | |||||| | ||| || ||| | || |||| Sbjct 5452 CCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGA 5511 Query 221181 TGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCA 221240 || |||||||||||||||||||| | || || || ||||| || ||||||| || Sbjct 5512 AGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAACA 5571 Query 221241 GACTGTTGCGCAGTCCGAATCTATTGATGGACTTT---CTCAGCGTGTTCCAGTCACAGT 221297 |||||||||||| ||| ||||| ||| | ||||| || |||||| || Sbjct 5572 GACTGTTGCGCACGCCGTGCTCCTTGAT---CTTGAGACGCAGCGAGTCCCAGTCCCA-- 5626 Query 221298 GTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACA 221357 |||||| | |||| Sbjct 5627 -------CAGGTCCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACA 5679 Query 221358 CCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCG 221417 | ||| ||| ||||||| | ||| || | ||| | ||| || |||| ||| || Sbjct 5680 CGGGAGACCCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGCATGACGCCG 5739 Query 221418 TCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGA 221476 |||| |||||||||||||| |||||||||||| ||||||||| ||| | ||||| || Sbjct 5740 TCAGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAG-CTCACGCGCCTCCGGC 5798 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || || ||||| |||||| | | || | || |||| ||||| || || | |||| Sbjct 5799 GACTCAAAAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCG 5858 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 || |||| ||| | | ||||| | ||| ||| || ||||| || || ||||||||| Sbjct 5859 ATCGGCCGGTGACGCATGTTGCTGTTGCG--CGCCTCCGGCACAGGGTAGTAGTTGACGT 5916 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 |||| | | ||| ||||| | | || | |||||| ||||||||| | Sbjct 5917 CGATGATACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGT 5976 Query 221655 TGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGG 221714 | || | ||| | ||| || ||||||||| | |||| ||| | Sbjct 5977 CGTACGTC---TCGTTGGCGTAGT---------CCACAAAAG-----ACGGCAGCGCCAG 6019 Query 221715 C-----CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 | |||||| ||||| |||||||| || | |||| || |||||||| || Sbjct 6020 CGACGACAGGTTGCACACCGCCACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCA 6079 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-T 221828 |||||| || |||||| ||||||| || || || |||||| ||| ||| | | Sbjct 6080 CAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGT 6138 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||| ||||| || || ||| |||||| ||| ||| |||| | | ||| | Sbjct 6139 CCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACA 6198 Query 221889 GTTCTCTGGCGCTC-ACCGTCCTCTTGACTGCA----CCCTCGGTCTTTTCATAC--CCG 221941 | | ||||| || ||||| | ||| || ||||| ||| || ||| | Sbjct 6199 GCT-TCTGGGCCTTGACCGTGC----GACGGCCACGGCCCTC---CTTCTCGTACTTCTC 6250 Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||| | || | | |||| || ||||| ||| |||| || || ||| ||| Sbjct 6251 GTACAAGGCCT--CGAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGGGG 6308 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 |||||||| |||||| ||| | | || | || |||||| |||||||||||||| Sbjct 6309 CACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAG 6368 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 |||||| | || || || | || || ||||||| ||| | ||| || | ||| || Sbjct 6369 AGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCG 6428 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA--GCGCCGGGTC 222179 | ||||| || | |||||| |||||||||||||| |||| | |||| ||||| || | Sbjct 6429 AGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGATG--CAGAAGGCGCCTGGCC 6486 Query 222180 GCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTA 222239 ||||||| |||||||| ||||| | || |||||| | ||| || | || | Sbjct 6487 GCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGA 6546 Query 222240 CCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC 222299 | | ||||||||| |||||||||||| |||||| | || ||| | || | | Sbjct 6547 CAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGC---GGATGC 6603 Query 222300 --TGG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 ||| | ||| ||||| ||||| || || |||||||| ||||| ||||||| | Sbjct 6604 GGTGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGG 6663 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 |||| ||||||||| || ||| ||||| | || | ||| || || |||| | || Sbjct 6664 TGTCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCT 6723 Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476 | | || || | | ||||| || |||||||| |||||||| ||| | | | Sbjct 6724 GGGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGAACTTGTTGG 6783 Query 222477 ACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGC 222536 |||| | ||||||||| | ||| | | | |||||| || ||| | || Sbjct 6784 ACATGTAGTTGTACGTCTCCAGGACGCGCTCCACGTTGTCGCCCCAGATCCCGACCGCCA 6843 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGT 222593 | |||| ||||| |||||||| ||| || | | || | ||||| ||||||| Sbjct 6844 CGCGCATGATCATGTGCTGGGGCCGCTCAAC-GATCTTGCCGTTGAGCT--TAAGCAGGT 6900 Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 |||| ||||| |||||||| |||||||| Sbjct 6901 ACGAACGCTCCAGCGTCTTGAAGCCAAAGTA 6931 >seq1 Length=398088 Score = 149 bits (164), Expect = 1e-30 Identities = 307/461 (67%), Gaps = 11/461 (2%) Strand=Plus/Plus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| |||| |||| ||||| || || ||||| || ||||||||||| |||||||| Sbjct 36637 CTACCTTTGCGCAGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCG 36696 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 | || || ||||||||||||| ||| || || |||||||| ||| ||| |||| Sbjct 36697 CTTTCTCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCA 36756 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGG 26044 ||||||| ||| | |||||||| || |||| || || ||||||||||| | | | Sbjct 36757 ACGAGCTGATCTCGCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTC-- 36814 Query 26045 GCCACTTGCTCCACAAACCTTCTCA-AGAGACCG-TCTACAG--TATCATCAAAGAGGCT 26100 ||| || | |||| | || ||| | | | || |||||| || || Sbjct 36815 -CCATCTG----AAGAACCGCCCCAGCAAGAAGGTTATTGAGGACATCATCGTCGATGCC 36869 Query 26101 GTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAAC 26160 || |||||||| ||||||| | ||||||||||| Sbjct 36870 GTCAAGATCGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAAC 36929 Query 26161 AACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGA 26220 | ||||||| || |||||||||| ||||||||| | |||||| || || Sbjct 36930 TCGACGCTCATGAAGCAGTACATTGAGTTTGTGGCCGATCGCCTGCTGGTTTCTCTCGGC 36989 Query 26221 CTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAA 26280 || || | ||| | || ||||| || ||||| ||||| ||||| || ||| Sbjct 36990 AACGACAAGGTGTACCGCTCGAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGC 37049 Query 26281 GGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || ||||||||||||||||| ||| | ||||||||||| || Sbjct 37050 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTACCA 37090 Score = 113 bits (124), Expect = 8e-20 Identities = 184/262 (70%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| |||||| || || ||||| |||||| Sbjct 36190 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCTGAGGAGATCGATCTG 36249 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||||||| ||| |||| | ||| || || | ||||||| | || ||| Sbjct 36250 TCCAAGGACATGCACGACTGGAACAACCGC-CTGACCGATGACGAGCGG---TTCTTCAT 36305 Query 25593 GT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 | || | | || ||||| || || || ||||| || || |||||||| ||| ||| Sbjct 36306 ATCCCACATCCTTGCCTTCTTCGCCGCGTCGGATGGCATTGTCAACGAGAACCTGGTCGA 36365 Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | | |||| | | || || ||| |||||| ||||||||||| |||||||| Sbjct 36366 GCGCTTCAGCGGCGAGGTCCAGGTTCCCGAGGCCCGTTGTTTCTACGGCTTCCAGATCAT 36425 Query 25710 CATCGAAAATGTGCACTCTGAG 25731 || || || | ||||||||| Sbjct 36426 GATGGAGAACATCCACTCTGAG 36447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928834304053760