Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq376 336 4e-87
seq1 149 1e-30
>seq376
Length=8930
Score = 336 bits (372), Expect = 4e-87
Identities = 1034/1591 (65%), Gaps = 86/1591 (5%)
Strand=Plus/Plus
Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGA----CCATGTGCTTGTTCA 221120
||| | ||||| ||| || ||| | || |||| |||| | ||||| | || |
Sbjct 5396 CATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTTCAGAAGCCATGGG----TTGA 5451
Query 221121 CCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGA 221180
|||| ||||| || || | ||||| | | |||||| | ||| || ||| | || ||||
Sbjct 5452 CCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGA 5511
Query 221181 TGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCA 221240
|| |||||||||||||||||||| | || || || ||||| || ||||||| ||
Sbjct 5512 AGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAACA 5571
Query 221241 GACTGTTGCGCAGTCCGAATCTATTGATGGACTTT---CTCAGCGTGTTCCAGTCACAGT 221297
|||||||||||| ||| ||||| ||| | ||||| || |||||| ||
Sbjct 5572 GACTGTTGCGCACGCCGTGCTCCTTGAT---CTTGAGACGCAGCGAGTCCCAGTCCCA-- 5626
Query 221298 GTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACA 221357
|||||| | ||||
Sbjct 5627 -------CAGGTCCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACA 5679
Query 221358 CCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCG 221417
| ||| ||| ||||||| | ||| || | ||| | ||| || |||| ||| ||
Sbjct 5680 CGGGAGACCCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGCATGACGCCG 5739
Query 221418 TCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGA 221476
|||| |||||||||||||| |||||||||||| ||||||||| ||| | ||||| ||
Sbjct 5740 TCAGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAG-CTCACGCGCCTCCGGC 5798
Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
|| || ||||| |||||| | | || | || |||| ||||| || || | ||||
Sbjct 5799 GACTCAAAAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCG 5858
Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594
|| |||| ||| | | ||||| | ||| ||| || ||||| || || |||||||||
Sbjct 5859 ATCGGCCGGTGACGCATGTTGCTGTTGCG--CGCCTCCGGCACAGGGTAGTAGTTGACGT 5916
Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654
|||| | | ||| ||||| | | || | |||||| ||||||||| |
Sbjct 5917 CGATGATACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGT 5976
Query 221655 TGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGG 221714
| || | ||| | ||| || ||||||||| | |||| ||| |
Sbjct 5977 CGTACGTC---TCGTTGGCGTAGT---------CCACAAAAG-----ACGGCAGCGCCAG 6019
Query 221715 C-----CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769
| |||||| ||||| |||||||| || | |||| || |||||||| ||
Sbjct 6020 CGACGACAGGTTGCACACCGCCACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCA 6079
Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-T 221828
|||||| || |||||| ||||||| || || || |||||| ||| ||| | |
Sbjct 6080 CAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGT 6138
Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888
||||||| ||||| || || ||| |||||| ||| ||| |||| | | ||| |
Sbjct 6139 CCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACA 6198
Query 221889 GTTCTCTGGCGCTC-ACCGTCCTCTTGACTGCA----CCCTCGGTCTTTTCATAC--CCG 221941
| | ||||| || ||||| | ||| || ||||| ||| || ||| |
Sbjct 6199 GCT-TCTGGGCCTTGACCGTGC----GACGGCCACGGCCCTC---CTTCTCGTACTTCTC 6250
Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001
||| | || | | |||| || ||||| ||| |||| || || ||| |||
Sbjct 6251 GTACAAGGCCT--CGAACTCGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGGGG 6308
Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061
|||||||| |||||| ||| | | || | || |||||| ||||||||||||||
Sbjct 6309 CACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAG 6368
Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121
|||||| | || || || | || || ||||||| ||| | ||| || | ||| ||
Sbjct 6369 AGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCG 6428
Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA--GCGCCGGGTC 222179
| ||||| || | |||||| |||||||||||||| |||| | |||| ||||| || |
Sbjct 6429 AGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGATG--CAGAAGGCGCCTGGCC 6486
Query 222180 GCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTA 222239
||||||| |||||||| ||||| | || |||||| | ||| || | || |
Sbjct 6487 GCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGA 6546
Query 222240 CCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC 222299
| | ||||||||| |||||||||||| |||||| | || ||| | || | |
Sbjct 6547 CAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTATGAGCCAGTGGCGC---GGATGC 6603
Query 222300 --TGG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356
||| | ||| ||||| ||||| || || |||||||| ||||| ||||||| |
Sbjct 6604 GGTGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGG 6663
Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416
|||| ||||||||| || ||| ||||| | || | ||| || || |||| | ||
Sbjct 6664 TGTCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCT 6723
Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476
| | || || | | ||||| || |||||||| |||||||| ||| | | |
Sbjct 6724 GGGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGAACTTGTTGG 6783
Query 222477 ACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGC 222536
|||| | ||||||||| | ||| | | | |||||| || ||| | ||
Sbjct 6784 ACATGTAGTTGTACGTCTCCAGGACGCGCTCCACGTTGTCGCCCCAGATCCCGACCGCCA 6843
Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGT 222593
| |||| ||||| |||||||| ||| || | | || | ||||| |||||||
Sbjct 6844 CGCGCATGATCATGTGCTGGGGCCGCTCAAC-GATCTTGCCGTTGAGCT--TAAGCAGGT 6900
Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624
|||| ||||| |||||||| ||||||||
Sbjct 6901 ACGAACGCTCCAGCGTCTTGAAGCCAAAGTA 6931
>seq1
Length=398088
Score = 149 bits (164), Expect = 1e-30
Identities = 307/461 (67%), Gaps = 11/461 (2%)
Strand=Plus/Plus
Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924
|||| |||| |||| ||||| || || ||||| || ||||||||||| ||||||||
Sbjct 36637 CTACCTTTGCGCAGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCG 36696
Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984
| || || ||||||||||||| ||| || || |||||||| ||| ||| ||||
Sbjct 36697 CTTTCTCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCA 36756
Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGG 26044
||||||| ||| | |||||||| || |||| || || ||||||||||| | | |
Sbjct 36757 ACGAGCTGATCTCGCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTC-- 36814
Query 26045 GCCACTTGCTCCACAAACCTTCTCA-AGAGACCG-TCTACAG--TATCATCAAAGAGGCT 26100
||| || | |||| | || ||| | | | || |||||| || ||
Sbjct 36815 -CCATCTG----AAGAACCGCCCCAGCAAGAAGGTTATTGAGGACATCATCGTCGATGCC 36869
Query 26101 GTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAAC 26160
|| |||||||| ||||||| | |||||||||||
Sbjct 36870 GTCAAGATCGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAAC 36929
Query 26161 AACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGA 26220
| ||||||| || |||||||||| ||||||||| | |||||| || ||
Sbjct 36930 TCGACGCTCATGAAGCAGTACATTGAGTTTGTGGCCGATCGCCTGCTGGTTTCTCTCGGC 36989
Query 26221 CTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAA 26280
|| || | ||| | || ||||| || ||||| ||||| ||||| || |||
Sbjct 36990 AACGACAAGGTGTACCGCTCGAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGC 37049
Query 26281 GGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|| ||||||||||||||||| ||| | ||||||||||| ||
Sbjct 37050 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTACCA 37090
Score = 113 bits (124), Expect = 8e-20
Identities = 184/262 (70%), Gaps = 11/262 (4%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||||||| | ||| |||||| || || ||||| ||||||
Sbjct 36190 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCTGAGGAGATCGATCTG 36249
Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||||||||| ||| |||| | ||| || || | ||||||| | || |||
Sbjct 36250 TCCAAGGACATGCACGACTGGAACAACCGC-CTGACCGATGACGAGCGG---TTCTTCAT 36305
Query 25593 GT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649
| || | | || ||||| || || || ||||| || || |||||||| ||| |||
Sbjct 36306 ATCCCACATCCTTGCCTTCTTCGCCGCGTCGGATGGCATTGTCAACGAGAACCTGGTCGA 36365
Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709
| | |||| | | || || ||| |||||| ||||||||||| ||||||||
Sbjct 36366 GCGCTTCAGCGGCGAGGTCCAGGTTCCCGAGGCCCGTTGTTTCTACGGCTTCCAGATCAT 36425
Query 25710 CATCGAAAATGTGCACTCTGAG 25731
|| || || | |||||||||
Sbjct 36426 GATGGAGAACATCCACTCTGAG 36447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928834304053760
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