Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq376 174 2e-38 seq444 82.4 9e-11 >seq376 Length=8930 Score = 174 bits (192), Expect = 2e-38 Identities = 998/1579 (63%), Gaps = 35/1579 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || |||| ||| || || || | || ||| Sbjct 6865 CCCCAGCACATGATCATGCGCGTGGCGGTCGGGATCTGGGGCGACAACGTGGAGCGCGTC 6806 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||| || | |||||| | | || | |||| ||||| | || || || || Sbjct 6805 CTGGAGACGTACAACTACATGTCCAACAAGT-TCTTCACACACGCGTCGCCCACGCTTTT 6747 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| ||||| || || | | ||| | | |||||||| | | || ||||| || Sbjct 6746 CAACGCTGGCACGCCCCAAGCCCAGCTCGCGTCGTGCTTCCTGGTTGACATGAAGGATGA 6687 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCT 75448 | || | || ||||| | || || | | | | ||||| | ||||| ||| ||| Sbjct 6686 CAGCATTGAGGGCATCTACGACACCCTCAAG-ACT-TGCGCTATGATCTCCAAGACGGCG 6629 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || || || |||||| || |||| | | |||| | || ||| || || Sbjct 6628 GGTGGCATCGGGATGAACGTCCACCGCATCCGCGCCACTGGCTCATACATTGCCGGCACC 6569 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| ||| | || ||| | || ||||| ||||| || ||| ||| || |||||| Sbjct 6568 AACGGTACATCCAACGGCATTGTCCCTATGCTGCGCGTGTTCAACAACACGGCCCGCTAT 6509 Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || | || | || ||| || ||| | || || ||||| |||| || ||| Sbjct 6508 GTGGACCAGGGTGGAAACAAGCG--GCCAGGCG-CCTTCTGCATCTACCTGGAGCCGTGG 6452 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 ||||| || | | |||||||| || | || ||||| || | || |||| || Sbjct 6451 CATGCTGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCATGGCAAGGAGGAGGTACGC 6392 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | || || || | || ||||| || ||||| ||||||||||| || ||| || Sbjct 6391 GCCCGCGACCTGTTCCTGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAAG 6332 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 || | ||| | || | || || | || || ||||| ||||| || Sbjct 6331 AACGGCGACTGGACGCTGATGTGCCCCAATGAGTGCCCGGGTCTGGCCGACTGCTACGGC 6272 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTA 75862 || ||||| || ||| | ||| ||||| || ||||||| | | | | || || Sbjct 6271 GACGAGTTCGAGGCCTTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCGTCGCACGGT- 6213 Query 75863 CCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 | || | | || | | ||| | || | || | | ||||||||||| || | || | Sbjct 6212 CAAGGCCCAGAAGCTGTGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCGTT 6153 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 ||||| |||||||| || ||| ||||| ||||| ||||| |||| || ||| Sbjct 6152 CATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCG 6093 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 ||||| || || ||||| || ||| | |||||| | |||||| ||| || || Sbjct 6092 CAGCTCCAACCTGTGCACAGAGATTATCGAGTACTGCGCGCCCGATGAGGTGGCGGTGTG 6033 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101 ||| || | || | || || || | ||| | | | | || | || | Sbjct 6032 CAACCTGTCGTCGCTGGCGCTGCCGTCTTTTGTGGACTACGCCAACGAGACGTACGACTT 5973 Query 76102 TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAG 76161 | || ||||| || |||| || | || || || ||||| |||| ||| Sbjct 5972 CCAGAAGCTTCACGAGGTCACGCAGGTGGTGGTGCGCAACCTGAACCGTATCATCGACGT 5913 Query 76162 AAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTT 76221 || | || || || | ||||| || || ||||| ||| | || || ||| | Sbjct 5912 CAACTACTACCCTGTGCCGGAGGCGCGCAACAGCAACATGCGTCACCGGCCGATCGGTGT 5853 Query 76222 GGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGATTCAGATG 76280 |||||| || || | ||||||| || | | ||| | | | | ||||| || | Sbjct 5852 GGGTGTCCAGGGCTTGGCGGATGCGTTCCTGGCGCTGCGGATGC-CTTTTGAGTCGCCGG 5794 Query 76281 AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGA 76340 | || ||| | || | |||||||| || || || ||||| | ||| |||| Sbjct 5793 AGGCGCGTGAGCTCAACAAGCAGATCTTTGAGACGATCTACCACGCTGCGCTGACGGCGT 5734 Query 76341 GTTGTGAATTGGCTGAAGCCCAAGGTTCC-TATGAGACATTTGAGGGTTCTCCCGCGTCC 76399 || || |||| ||||| ||| || ||| | ||||| ||||||| ||| Sbjct 5733 CATGCGACCTGGC-GAAGCTGGAGGGCGTGTACTCGACGTACGAGGGGTCTCCCGTGTCG 5675 Query 76400 CAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA-GCTCAACTACGACTGGGA 76458 || || | || ||||||||||||||||| | | || || | | | | |||||||| Sbjct 5674 CAGGGCATCCTGCAGTTTGATATGTGGGACG-TCAAGCCGACGGACCTGTGGGACTGGGA 5616 Query 76459 -----TGT-TCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 76512 || ||||||| ||||||||| | || | || |||||||| ||| |||| Sbjct 5615 CTCGCTGCGTCTCAAG------ATCAAGGAGCACGGCGTGCGCAACAGTCTGTTGGTGGC 5562 Query 76513 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATA 76572 || ||||| || || || ||| | || ||| |||| || || |||||||| || ||||| Sbjct 5561 GCCGATGCCGACGGCATCGACCTCGCAGATCCTGGGCAACAACGAATGCTTCGAGCCATA 5502 Query 76573 CACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCA 76632 ||| | |||||||||| | | | || ||||| ||||| | |||||| Sbjct 5501 CACGTCCAACATCTACCAGCGCCGTGTGCTGGCAGGCGAGTTCCAGGTGGTCAACCCATG 5442 Query 76633 CCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 76692 || | || ||||| | | || || || ||||| | | |||||| | | ||| | Sbjct 5441 GCTTCTGAAGGACCTGGTGGACATGGGCCTGTGGTCGGACAACATGAAGAACCGCATCAT 5382 Query 76693 GAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTA 76752 || ||| || || | || || ||| | | ||||| | ||| |||||| || || Sbjct 5381 TGCAGAGGGCGGGTCGGTCCAGAACATCCCGAACATCCCGGCTGAAATCAAGGCGCTGTA 5322 Query 76753 CCGCACAGTGTGGGAAATC 76771 | ||||||||||| ||| Sbjct 5321 CAAGACAGTGTGGGAGATC 5303 >seq444 Length=208719 Score = 82.4 bits (90), Expect = 9e-11 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 |||||||||||||| || ||||| | || || || || |||||||| ||||| || Sbjct 204113 GGTGCCAAGATCCCGCGCGGCGCGATCCTGGCCGGGCCACCGGGTACGGGCAAGACGCTG 204172 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAA 175393 || ||| |||| || || || || || || ||| || || | || || | | Sbjct 204173 CTGGCCAAGGCCACGGCCGGCGAGTCGGGGGTGCCGTTCTTC-AGCG-TCAGCGGGTCGG 204230 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | ||||||||||||||||| || ||||| || |||| |||||||| |||| | | Sbjct 204231 AGTTTGTGGAGATGTTTGTGGGCGTGGGCGCGTCGCGGGTGCGCGATCTGTTTGCGACGG 204290 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGC 175506 | ||| | | | || || || | ||||| || ||||| || ||| | ||| Sbjct 204291 CGCGCAAGAGTGCGCCGTGCATCATTTTCATCGACGAGATCGACGCGATCGGC 204343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562858763520