Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq376 174 2e-38
seq444 82.4 9e-11
>seq376
Length=8930
Score = 174 bits (192), Expect = 2e-38
Identities = 998/1579 (63%), Gaps = 35/1579 (2%)
Strand=Plus/Minus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| ||||||| || || |||| ||| || || || | || |||
Sbjct 6865 CCCCAGCACATGATCATGCGCGTGGCGGTCGGGATCTGGGGCGACAACGTGGAGCGCGTC 6806
Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330
||||||| ||| || | |||||| | | || | |||| ||||| | || || || ||
Sbjct 6805 CTGGAGACGTACAACTACATGTCCAACAAGT-TCTTCACACACGCGTCGCCCACGCTTTT 6747
Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390
||| ||||| || || | | ||| | | |||||||| | | || ||||| ||
Sbjct 6746 CAACGCTGGCACGCCCCAAGCCCAGCTCGCGTCGTGCTTCCTGGTTGACATGAAGGATGA 6687
Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCT 75448
| || | || ||||| | || || | | | | ||||| | ||||| ||| |||
Sbjct 6686 CAGCATTGAGGGCATCTACGACACCCTCAAG-ACT-TGCGCTATGATCTCCAAGACGGCG 6629
Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508
|| || || |||||| || |||| | | |||| | || ||| || ||
Sbjct 6628 GGTGGCATCGGGATGAACGTCCACCGCATCCGCGCCACTGGCTCATACATTGCCGGCACC 6569
Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568
|| ||| ||| | || ||| | || ||||| ||||| || ||| ||| || ||||||
Sbjct 6568 AACGGTACATCCAACGGCATTGTCCCTATGCTGCGCGTGTTCAACAACACGGCCCGCTAT 6509
Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622
|| | || | || ||| || ||| | || || ||||| |||| || |||
Sbjct 6508 GTGGACCAGGGTGGAAACAAGCG--GCCAGGCG-CCTTCTGCATCTACCTGGAGCCGTGG 6452
Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682
||||| || | | |||||||| || | || ||||| || | || |||| ||
Sbjct 6451 CATGCTGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCATGGCAAGGAGGAGGTACGC 6392
Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742
| || || || | || ||||| || ||||| ||||||||||| || ||| ||
Sbjct 6391 GCCCGCGACCTGTTCCTGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAAG 6332
Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802
|| | ||| | || | || || | || || ||||| ||||| ||
Sbjct 6331 AACGGCGACTGGACGCTGATGTGCCCCAATGAGTGCCCGGGTCTGGCCGACTGCTACGGC 6272
Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTA 75862
|| ||||| || ||| | ||| ||||| || ||||||| | | | | || ||
Sbjct 6271 GACGAGTTCGAGGCCTTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCGTCGCACGGT- 6213
Query 75863 CCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921
| || | | || | | ||| | || | || | | ||||||||||| || | || |
Sbjct 6212 CAAGGCCCAGAAGCTGTGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCGTT 6153
Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981
||||| |||||||| || ||| ||||| ||||| ||||| |||| || |||
Sbjct 6152 CATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCG 6093
Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041
||||| || || ||||| || ||| | |||||| | |||||| ||| || ||
Sbjct 6092 CAGCTCCAACCTGTGCACAGAGATTATCGAGTACTGCGCGCCCGATGAGGTGGCGGTGTG 6033
Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101
||| || | || | || || || | ||| | | | | || | || |
Sbjct 6032 CAACCTGTCGTCGCTGGCGCTGCCGTCTTTTGTGGACTACGCCAACGAGACGTACGACTT 5973
Query 76102 TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAG 76161
| || ||||| || |||| || | || || || ||||| |||| |||
Sbjct 5972 CCAGAAGCTTCACGAGGTCACGCAGGTGGTGGTGCGCAACCTGAACCGTATCATCGACGT 5913
Query 76162 AAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTT 76221
|| | || || || | ||||| || || ||||| ||| | || || ||| |
Sbjct 5912 CAACTACTACCCTGTGCCGGAGGCGCGCAACAGCAACATGCGTCACCGGCCGATCGGTGT 5853
Query 76222 GGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGATTCAGATG 76280
|||||| || || | ||||||| || | | ||| | | | | ||||| || |
Sbjct 5852 GGGTGTCCAGGGCTTGGCGGATGCGTTCCTGGCGCTGCGGATGC-CTTTTGAGTCGCCGG 5794
Query 76281 AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGA 76340
| || ||| | || | |||||||| || || || ||||| | ||| ||||
Sbjct 5793 AGGCGCGTGAGCTCAACAAGCAGATCTTTGAGACGATCTACCACGCTGCGCTGACGGCGT 5734
Query 76341 GTTGTGAATTGGCTGAAGCCCAAGGTTCC-TATGAGACATTTGAGGGTTCTCCCGCGTCC 76399
|| || |||| ||||| ||| || ||| | ||||| ||||||| |||
Sbjct 5733 CATGCGACCTGGC-GAAGCTGGAGGGCGTGTACTCGACGTACGAGGGGTCTCCCGTGTCG 5675
Query 76400 CAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA-GCTCAACTACGACTGGGA 76458
|| || | || ||||||||||||||||| | | || || | | | | ||||||||
Sbjct 5674 CAGGGCATCCTGCAGTTTGATATGTGGGACG-TCAAGCCGACGGACCTGTGGGACTGGGA 5616
Query 76459 -----TGT-TCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 76512
|| ||||||| ||||||||| | || | || |||||||| ||| ||||
Sbjct 5615 CTCGCTGCGTCTCAAG------ATCAAGGAGCACGGCGTGCGCAACAGTCTGTTGGTGGC 5562
Query 76513 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATA 76572
|| ||||| || || || ||| | || ||| |||| || || |||||||| || |||||
Sbjct 5561 GCCGATGCCGACGGCATCGACCTCGCAGATCCTGGGCAACAACGAATGCTTCGAGCCATA 5502
Query 76573 CACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCA 76632
||| | |||||||||| | | | || ||||| ||||| | ||||||
Sbjct 5501 CACGTCCAACATCTACCAGCGCCGTGTGCTGGCAGGCGAGTTCCAGGTGGTCAACCCATG 5442
Query 76633 CCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 76692
|| | || ||||| | | || || || ||||| | | |||||| | | ||| |
Sbjct 5441 GCTTCTGAAGGACCTGGTGGACATGGGCCTGTGGTCGGACAACATGAAGAACCGCATCAT 5382
Query 76693 GAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTA 76752
|| ||| || || | || || ||| | | ||||| | ||| |||||| || ||
Sbjct 5381 TGCAGAGGGCGGGTCGGTCCAGAACATCCCGAACATCCCGGCTGAAATCAAGGCGCTGTA 5322
Query 76753 CCGCACAGTGTGGGAAATC 76771
| ||||||||||| |||
Sbjct 5321 CAAGACAGTGTGGGAGATC 5303
>seq444
Length=208719
Score = 82.4 bits (90), Expect = 9e-11
Identities = 160/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
|||||||||||||| || ||||| | || || || || |||||||| ||||| ||
Sbjct 204113 GGTGCCAAGATCCCGCGCGGCGCGATCCTGGCCGGGCCACCGGGTACGGGCAAGACGCTG 204172
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAA 175393
|| ||| |||| || || || || || || ||| || || | || || | |
Sbjct 204173 CTGGCCAAGGCCACGGCCGGCGAGTCGGGGGTGCCGTTCTTC-AGCG-TCAGCGGGTCGG 204230
Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453
| ||||||||||||||||| || ||||| || |||| |||||||| |||| | |
Sbjct 204231 AGTTTGTGGAGATGTTTGTGGGCGTGGGCGCGTCGCGGGTGCGCGATCTGTTTGCGACGG 204290
Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGC 175506
| ||| | | | || || || | ||||| || ||||| || ||| | |||
Sbjct 204291 CGCGCAAGAGTGCGCCGTGCATCATTTTCATCGACGAGATCGACGCGATCGGC 204343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596562858763520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |