Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq897 147 2e-30 seq233 89.7 4e-13 >seq897 Length=67576 Score = 147 bits (162), Expect = 2e-30 Identities = 203/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 34351 ACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCG 34410 ||||||||| |||||| || || || |||||| | ||| ||| ||||||| |||| Sbjct 2053 ACAAACTTGGAGATGAAGCCGTCGAGATAGTCCTGCAGCTTGGCGGCCTCGTGGGCGCCG 1994 Query 34411 TTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCG 34470 |||| ||| | || |||| ||| | || || ||||| ||||| | || Sbjct 1993 TTGATGATCCAGCGGTCGTCGGGCGGGTCGCTGTTGGTCTGGGCGCCGAGCTCAAAGCCA 1934 Query 34471 AAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTG 34530 |||||||| || |||| ||||||| || | |||| || ||||| | || |||| Sbjct 1933 AAGTACTTGATCAGGTACGTGGCCGGGCGGGCCAGCGACTGGGCGACGCTGCTCAGGTTG 1874 Query 34531 ACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATT 34590 || || |||||||||||||||||||| ||||||| ||||| ||||||| ||| Sbjct 1873 GTGACCACGGTCTTGATGCCGTTGCCCTTGCCTTCGATCTTGGTCTGGATGCGCTCCATC 1814 Query 34591 TTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTTCAC 34634 |||||||||||||| |||||| |||| ||| |||||| || Sbjct 1813 TTGTAGCGGTAGAAGACGTCCGTGACATCACGGCGAACGTTGAC 1770 >seq233 Length=18884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | |||||||| || || ||| | || |||| | Sbjct 2259 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 2200 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| ||||| || ||| | || ||| || Sbjct 2199 GACACGATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 2140 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | |||||| || ||||||||||||| | | || || || |||||| Sbjct 2139 CAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACAAC 2080 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || ||| ||||| ||||| | | ||||| || || Sbjct 2079 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGCGG 2033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412837051517672