Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq233 95.1 1e-14
>seq233
Length=18884
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || ||||| || | || ||||| || || ||| | || |||| |
Sbjct 2031 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 1972
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || |||||| ||||| || ||| | || ||| |||
Sbjct 1971 GACACGATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCGCCGGACCAG 1912
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | |||||| || ||||||||||||| || || |||||||||
Sbjct 1911 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACCCTGAGCGACTACAAC 1852
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| |||||||| ||| ||||| |||||
Sbjct 1851 ATTCAGAAGGAGTCGACGCTGCACCTGGTG 1822
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || |||||||| || | || ||||| || ||||| |||| |||| ||
Sbjct 1803 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1744
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || ||| | || ||| |||
Sbjct 1743 GACACGATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1684
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || |||| ||||| || ||||||||||| | || || | |||||||||
Sbjct 1683 CAGCGGCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGGCGGACGCTGTCCGACTACAAC 1624
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| |||||| ||| ||||| |||||
Sbjct 1623 ATTCAGAAGGAGAGCACGCTGCACCTGGTG 1594
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || ||||| || | || ||||| || || ||| | || |||| |
Sbjct 2259 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 2200
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || |||||| || || || ||| | || ||| |||
Sbjct 2199 GACACGATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 2140
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | |||||| || ||||||||||| | | || || |||||||||
Sbjct 2139 CAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACAAC 2080
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || |||||||| ||| ||||| |||||
Sbjct 2079 ATCCAGAAGGAGTCGACGCTGCACCTGGTG 2050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398872405374856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |