Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq376 203 3e-47
seq1 104 2e-17
>seq376
Length=8930
Score = 203 bits (224), Expect = 3e-47
Identities = 978/1535 (64%), Gaps = 39/1535 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
|||||||| || |||||||| ||||||||||| | | || | ||| ||| | |||
Sbjct 5448 TTGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGC 5507
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || | || || ||||| | || || | || | ||| || ||||| |||||||
Sbjct 5508 TCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACC 5567
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
|||| || |||| |||| | | ||| ||| || | | ||||||||||
Sbjct 5568 AACAGACTGTTGCGCACGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCCAGTCCCAC 5627
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130
| || ||| | |||| |||||| || |||| || | || |||| | | |||
Sbjct 5628 AGGTCCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAGAC 5687
Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCG 147190
|| || |||| | ||| || || ||| ||||| || || ||| ||||
Sbjct 5688 --CCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGCATGACGCCGTCAGCG 5745
Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250
| | | ||| || || || ||| || ||||| || | ||| || |||
Sbjct 5746 CAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGCGCCTCCGGCGACTCAA 5805
Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310
||||||| ||||| || || ||||| ||||| ||||||| ||| || ||||| || |
Sbjct 5806 AAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGGCC 5865
Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCT--CGCTATGGGATAGTGGTTGCGATCAATAAT 147368
| || ||||||| | ||||| || | || |||| |||| || || ||
Sbjct 5866 GGTGACGCATGTTGCTGT--TGCGCGCCTCCGGCACAGGGTAGTAGTTGACGTCGATGAT 5923
Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428
||| ||||| ||||| || || | || | | || |||| ||| || || ||
Sbjct 5924 ACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGTCGTACGT 5983
Query 147429 CCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAG--ACGCCAGATTGCAGACGGCC 147486
| ||| || || | || | | ||| || ||| ||| ||||| || |||
Sbjct 5984 CTCGTTGGCGTA--GTCCACAAAAGACGGCAGCGCCAGCGACGACAGGTTGCACACCGCC 6041
Query 147487 GTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546
||| |||| ||| ||||| | || || | |||||||||| || |||
Sbjct 6042 ACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTG 6101
Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606
|||| || | ||| ||||| || || ||||| ||| ||| | |||||| |||| |
Sbjct 6102 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTG 6161
Query 147607 CCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGC 147663
|||||||| |||| || | || | ||| ||| | ||| || |||
Sbjct 6162 CCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCA---CAGCTTCTGGGCCTTGACCGTG 6218
Query 147664 TGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAG 147723
| || |||||||| || |||||| ||||||||| ||| |||||||||||||||
Sbjct 6219 CGACGGCCACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCGTAG 6278
Query 147724 CAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTA 147783
|| ||||| || || || |||| || || |||||||||| ||| | ||| | |
Sbjct 6279 CAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCTCC 6338
Query 147784 ACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGC 147841
|| || ||| ||||| ||||| | ||| ||||| | || |||| |||| | |
Sbjct 6339 ACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGTACC 6398
Query 147842 AATCCTCGGCGCCCATG----TTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTG 147896
||||| | ||||| ||||| || | | | || | | | | ||| || ||
Sbjct 6399 --TCCTCCTTG-CCATGGTTCTTGCG---CAGGTCGAGGAACTCGA-ACACGTCAGCATG 6451
Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953
||| || || | ||||| | | || ||| ||| ||||| |||||||| ||||
Sbjct 6452 CCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTTGTTTCCACCCTGGTCCACATA 6511
Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013
||| || ||||||| |||||||||| ||| || | | |||| | | || ||||||||
Sbjct 6512 GCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTACCGTTGGT 6571
Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCC-GCCGC 148072
| || | ||| ||| || | ||| ||||| | || ||||| ||||
Sbjct 6572 GCCGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCATCCCGATGCCACCCGC 6631
Query 148073 CGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGT 148132
||| ||| || || ||||||| | || ||||||||| || |||||||| |
Sbjct 6632 CGT-CTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCCCTCAATGCTGTCAT 6690
Query 148133 TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAA 148192
|| | | ||| || || ||||| | || | |||| || || |||||
Sbjct 6691 CCTTCATGTCAACCAGGAAGCACGACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAA 6750
Query 148193 GGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGT 148252
| ||||| |||||| || || || || | ||| | |||||||| | ||
Sbjct 6751 GCGTGGGCGACGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTACGTCTCCAGGACGC 6810
Query 148253 CTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTT 148312
|| | || |||||| || || | ||| |||||||||| ||||||||| || || |
Sbjct 6811 GCTCCACGTTGTCGCCCCAGATCCCGACCGCCACGCGCATGATCATGTGCTGGGGCCGCT 6870
Query 148313 CGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAG 148371
| | | |||| ||||| ||| || || || | || || || ||| | ||||||
Sbjct 6871 CAACGATCTTG-CCGTTGAGCTTAAGCAGGTACGAACGCTCCAGCGTCTTGAAGCCAAAG 6929
Query 148372 TACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406
|| | ||| | || || | || || |||||||
Sbjct 6930 TATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 6964
>seq1
Length=398088
Score = 104 bits (114), Expect = 2e-17
Identities = 249/374 (67%), Gaps = 27/374 (7%)
Strand=Plus/Plus
Query 46908 GGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACAC 46967
||| | ||||| |||||||| ||| |||||| |||||||||| ||||| || || |||
Sbjct 36729 GGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGCCTGCAC 36788
Query 46968 ACGGACTTTGCGTGTCT---------CTATTACAAGACGCGCGTGAATGAGAAATTAAAC 47018
|| ||||| || || || | || |||| ||| | |||| | |
Sbjct 36789 ACCGACTTCGCCTGCCTGCTGTTCTCCCATCTGAAGAACCGCCCCAGCAAGAAGGTTATT 36848
Query 47019 TCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACT 47078
||||| ||| | || || || | ||||| ||||||| | ||
Sbjct 36849 GAGGACATCATCGTC------------GATGCCGTCAAGATCGAGCAGGAGTTCCTCACC 36896
Query 47079 GCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGC-ACAGTCTATGTGCGAATATATTGA 47137
| ||| |||||| |||| |||||||||||||| | || || ||| | || |||||
Sbjct 36897 GAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACTCGACGCTC-ATGAAGCAGTACATTGA 36955
Query 47138 GTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTC--GT 47195
||||||||| ||||| ||| |||| ||||| ||| ||| | | || |||| |
Sbjct 36956 GTTTGTGGCCGATCGCCTGCTGGTTTCTCTCGG-CAA-CGACAAGGTGTACCGCTCGAGC 37013
Query 47196 AATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAA 47255
|| || ||||| || ||| | ||||| || || | ||||| ||||| || || |||||
Sbjct 37014 AACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAG 37073
Query 47256 CGAGTCGGAGAGTA 47269
|| ||||| || ||
Sbjct 37074 CGTGTCGGCGACTA 37087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476605814293440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |