Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq376 203 3e-47 seq1 104 2e-17 >seq376 Length=8930 Score = 203 bits (224), Expect = 3e-47 Identities = 978/1535 (64%), Gaps = 39/1535 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 |||||||| || |||||||| ||||||||||| | | || | ||| ||| | ||| Sbjct 5448 TTGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGC 5507 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || | || || ||||| | || || | || | ||| || ||||| ||||||| Sbjct 5508 TCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACC 5567 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 |||| || |||| |||| | | ||| ||| || | | |||||||||| Sbjct 5568 AACAGACTGTTGCGCACGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCCAGTCCCAC 5627 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130 | || ||| | |||| |||||| || |||| || | || |||| | | ||| Sbjct 5628 AGGTCCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAGAC 5687 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCG 147190 || || |||| | ||| || || ||| ||||| || || ||| |||| Sbjct 5688 --CCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGCATGACGCCGTCAGCG 5745 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | | | ||| || || || ||| || ||||| || | ||| || ||| Sbjct 5746 CAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGCGCCTCCGGCGACTCAA 5805 Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310 ||||||| ||||| || || ||||| ||||| ||||||| ||| || ||||| || | Sbjct 5806 AAGGCATCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGGCC 5865 Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCT--CGCTATGGGATAGTGGTTGCGATCAATAAT 147368 | || ||||||| | ||||| || | || |||| |||| || || || Sbjct 5866 GGTGACGCATGTTGCTGT--TGCGCGCCTCCGGCACAGGGTAGTAGTTGACGTCGATGAT 5923 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 ||| ||||| ||||| || || | || | | || |||| ||| || || || Sbjct 5924 ACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGTCGTACGT 5983 Query 147429 CCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAG--ACGCCAGATTGCAGACGGCC 147486 | ||| || || | || | | ||| || ||| ||| ||||| || ||| Sbjct 5984 CTCGTTGGCGTA--GTCCACAAAAGACGGCAGCGCCAGCGACGACAGGTTGCACACCGCC 6041 Query 147487 GTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546 ||| |||| ||| ||||| | || || | |||||||||| || ||| Sbjct 6042 ACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTG 6101 Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606 |||| || | ||| ||||| || || ||||| ||| ||| | |||||| |||| | Sbjct 6102 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTG 6161 Query 147607 CCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGC 147663 |||||||| |||| || | || | ||| ||| | ||| || ||| Sbjct 6162 CCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCA---CAGCTTCTGGGCCTTGACCGTG 6218 Query 147664 TGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAG 147723 | || |||||||| || |||||| ||||||||| ||| ||||||||||||||| Sbjct 6219 CGACGGCCACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCGTAG 6278 Query 147724 CAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTA 147783 || ||||| || || || |||| || || |||||||||| ||| | ||| | | Sbjct 6279 CAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCTCC 6338 Query 147784 ACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGC 147841 || || ||| ||||| ||||| | ||| ||||| | || |||| |||| | | Sbjct 6339 ACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGTACC 6398 Query 147842 AATCCTCGGCGCCCATG----TTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTG 147896 ||||| | ||||| ||||| || | | | || | | | | ||| || || Sbjct 6399 --TCCTCCTTG-CCATGGTTCTTGCG---CAGGTCGAGGAACTCGA-ACACGTCAGCATG 6451 Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953 ||| || || | ||||| | | || ||| ||| ||||| |||||||| |||| Sbjct 6452 CCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTTGTTTCCACCCTGGTCCACATA 6511 Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 ||| || ||||||| |||||||||| ||| || | | |||| | | || |||||||| Sbjct 6512 GCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTACCGTTGGT 6571 Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCC-GCCGC 148072 | || | ||| ||| || | ||| ||||| | || ||||| |||| Sbjct 6572 GCCGGCAATGTATGAGCCAGTGGCGCGGATGCGGTGGACGTTCATCCCGATGCCACCCGC 6631 Query 148073 CGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGT 148132 ||| ||| || || ||||||| | || ||||||||| || |||||||| | Sbjct 6632 CGT-CTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCCCTCAATGCTGTCAT 6690 Query 148133 TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAA 148192 || | | ||| || || ||||| | || | |||| || || ||||| Sbjct 6691 CCTTCATGTCAACCAGGAAGCACGACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAA 6750 Query 148193 GGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGT 148252 | ||||| |||||| || || || || | ||| | |||||||| | || Sbjct 6751 GCGTGGGCGACGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTACGTCTCCAGGACGC 6810 Query 148253 CTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTT 148312 || | || |||||| || || | ||| |||||||||| ||||||||| || || | Sbjct 6811 GCTCCACGTTGTCGCCCCAGATCCCGACCGCCACGCGCATGATCATGTGCTGGGGCCGCT 6870 Query 148313 CGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAG 148371 | | | |||| ||||| ||| || || || | || || || ||| | |||||| Sbjct 6871 CAACGATCTTG-CCGTTGAGCTTAAGCAGGTACGAACGCTCCAGCGTCTTGAAGCCAAAG 6929 Query 148372 TACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || | ||| | || || | || || ||||||| Sbjct 6930 TATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 6964 >seq1 Length=398088 Score = 104 bits (114), Expect = 2e-17 Identities = 249/374 (67%), Gaps = 27/374 (7%) Strand=Plus/Plus Query 46908 GGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACAC 46967 ||| | ||||| |||||||| ||| |||||| |||||||||| ||||| || || ||| Sbjct 36729 GGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGCCTGCAC 36788 Query 46968 ACGGACTTTGCGTGTCT---------CTATTACAAGACGCGCGTGAATGAGAAATTAAAC 47018 || ||||| || || || | || |||| ||| | |||| | | Sbjct 36789 ACCGACTTCGCCTGCCTGCTGTTCTCCCATCTGAAGAACCGCCCCAGCAAGAAGGTTATT 36848 Query 47019 TCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACT 47078 ||||| ||| | || || || | ||||| ||||||| | || Sbjct 36849 GAGGACATCATCGTC------------GATGCCGTCAAGATCGAGCAGGAGTTCCTCACC 36896 Query 47079 GCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGC-ACAGTCTATGTGCGAATATATTGA 47137 | ||| |||||| |||| |||||||||||||| | || || ||| | || ||||| Sbjct 36897 GAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACTCGACGCTC-ATGAAGCAGTACATTGA 36955 Query 47138 GTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTC--GT 47195 ||||||||| ||||| ||| |||| ||||| ||| ||| | | || |||| | Sbjct 36956 GTTTGTGGCCGATCGCCTGCTGGTTTCTCTCGG-CAA-CGACAAGGTGTACCGCTCGAGC 37013 Query 47196 AATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAA 47255 || || ||||| || ||| | ||||| || || | ||||| ||||| || || ||||| Sbjct 37014 AACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAG 37073 Query 47256 CGAGTCGGAGAGTA 47269 || ||||| || || Sbjct 37074 CGTGTCGGCGACTA 37087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605814293440