Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq233 158 1e-33 seq23 123 2e-23 seq204 118 1e-21 >seq233 Length=18884 Score = 158 bits (174), Expect = 1e-33 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||||| ||||||||||| |||| || || ||| | || || Sbjct 1594 CACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCCTC 1653 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| ||||| || |||| |||||||||||||| || | || |||||||||| Sbjct 1654 CAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1713 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 |||||| ||| | |||| | | ||||||||| |||||||| | ||| ||||| | Sbjct 1714 GATCTTCGACTTGA-CGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCT 1772 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||||| || || ||||| |||||||| Sbjct 1773 TGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || || ||||| || | ||| |||||||| || |||||||| || | | Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| |||| ||||||||||| |||||||| |||| |||||||||||||| || Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| |||||| ||| | |||| | | ||||||||| ||||| Sbjct 1469 ATCCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCGCTGCTCTCCAC 1527 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||| ||||| || ||||||| || || || || |||||||| Sbjct 1528 CTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| ||||||||||| ||| || ||| || |||| || Sbjct 1822 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTC 1881 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| |||||||| || | ||||||||||||| || | || |||||| ||| Sbjct 1882 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTG 1941 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||| | |||| | | |||||| ||| |||||||||| |||||||| | Sbjct 1942 AATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCT 2000 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | || || || || || ||||| Sbjct 2001 TGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| ||| || || || | || || Sbjct 2050 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 2109 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| |||||||| |||| ||||||||||||| || | || |||||||||| Sbjct 2110 CAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 2169 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||| | |||| | | |||||| ||| |||||||||| |||||||| | Sbjct 2170 AATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCT 2228 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | || || || || || ||||| Sbjct 2229 TGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259 >seq23 Length=165582 Score = 123 bits (136), Expect = 2e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || |||| ||||||||||| || ||||| Sbjct 62186 CTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAA 62127 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| || | || |||||||||| |||||| ||| | | | Sbjct 62126 GATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 62067 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||||| ||||| || || ||||||| || ||||| Sbjct 62066 GTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCAC 62007 Query 35725 AAA 35727 || Sbjct 62006 GAA 62004 >seq204 Length=21219 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || ||||| || | ||| |||||||| || |||||||| |||| Sbjct 5911 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 5852 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || |||| ||||||||||| | || Sbjct 5851 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 5792 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || |||||||||| |||||| ||| | | | | | |||||| |||| ||| Sbjct 5791 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTC---TCC 5735 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || ||||| | || || || || |||||||| Sbjct 5734 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 5685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788506032320