Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq233 158 1e-33
seq23 123 2e-23
seq204 118 1e-21
>seq233
Length=18884
Score = 158 bits (174), Expect = 1e-33
Identities = 163/211 (77%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| || | ||| |||||||| ||||||||||| |||| || || ||| | || ||
Sbjct 1594 CACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCCTC 1653
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
||||||||| ||||| || |||| |||||||||||||| || | || ||||||||||
Sbjct 1654 CAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1713
Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
|||||| ||| | |||| | | ||||||||| |||||||| | ||| ||||| |
Sbjct 1714 GATCTTCGACTTGA-CGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCT 1772
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| ||||||| || || ||||| ||||||||
Sbjct 1773 TGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803
Score = 156 bits (172), Expect = 4e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||| || | || || ||||| || | ||| |||||||| || |||||||| || | |
Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || ||| |||| ||||||||||| |||||||| |||| |||||||||||||| ||
Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| | |||||||||| |||||| ||| | |||| | | ||||||||| |||||
Sbjct 1469 ATCCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCGCTGCTCTCCAC 1527
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| | ||| ||||| || ||||||| || || || || ||||||||
Sbjct 1528 CTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575
Score = 122 bits (134), Expect = 8e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| || | ||| |||||| ||||||||||| ||| || ||| || |||| ||
Sbjct 1822 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTC 1881
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
||||||||| |||||||| || | ||||||||||||| || | || |||||| |||
Sbjct 1882 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTG 1941
Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
||||| ||| | |||| | | |||||| ||| |||||||||| |||||||| |
Sbjct 1942 AATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCT 2000
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| || || | || || || || || |||||
Sbjct 2001 TGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| || | ||| |||||| || |||||||| ||| || || || | || ||
Sbjct 2050 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 2109
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
||||||||| |||||||| |||| ||||||||||||| || | || ||||||||||
Sbjct 2110 CAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 2169
Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
||||| ||| | |||| | | |||||| ||| |||||||||| |||||||| |
Sbjct 2170 AATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCT 2228
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| || || | || || || || || |||||
Sbjct 2229 TGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259
>seq23
Length=165582
Score = 123 bits (136), Expect = 2e-23
Identities = 137/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| || |||| ||||||||||| || |||||
Sbjct 62186 CTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAA 62127
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| || | || |||||||||| |||||| ||| | | |
Sbjct 62126 GATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 62067
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || || ||||||| ||||| || || ||||||| || |||||
Sbjct 62066 GTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCAC 62007
Query 35725 AAA 35727
||
Sbjct 62006 GAA 62004
>seq204
Length=21219
Score = 118 bits (130), Expect = 1e-21
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||| | | || ||||| || | ||| |||||||| || |||||||| ||||
Sbjct 5911 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 5852
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || |||||||| || || || |||| ||||||||||| | ||
Sbjct 5851 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 5792
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686
| || |||||||||| |||||| ||| | | | | | |||||| |||| |||
Sbjct 5791 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTC---TCC 5735
Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| | ||||| || || ||||| | || || || || ||||||||
Sbjct 5734 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 5685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450788506032320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |