Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq233 145 8e-30 seq376 134 1e-26 seq204 122 9e-23 seq23 113 5e-20 >seq233 Length=18884 Score = 145 bits (160), Expect = 8e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| |||||||||||||||| | |||| || Sbjct 1814 AGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGA 1873 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 1874 CCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1933 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | ||||| ||||| ||||| || || || Sbjct 1934 TTATCCTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTG 1993 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| |||||||| Sbjct 1994 ATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 2042 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 2101 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 2102 CCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 2161 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | ||||| ||||| ||||| || || || Sbjct 2162 TTGTCCTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTG 2221 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| |||||||| Sbjct 2222 ATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| |||||| ||||| || |||||||||| || || | || | Sbjct 1358 AGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGC-GTCCG 1416 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| ||||| |||| |||||||| || ||||| || || || Sbjct 1417 CCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTC 1476 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| ||| | |||||| ||||| ||||| || Sbjct 1477 CTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGT 1536 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || || | || || ||||| || ||||| Sbjct 1537 AATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||| ||||| ||||||||||||||| | || | Sbjct 1586 AGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGC 1645 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || ||||||| |||||||| || ||||| ||||| || Sbjct 1646 CCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCC 1705 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||| ||||| ||||| ||| Sbjct 1706 TTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTA 1765 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || || || || ||||| Sbjct 1766 ATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803 >seq376 Length=8930 Score = 134 bits (148), Expect = 1e-26 Identities = 550/853 (64%), Gaps = 17/853 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | ||||||||||||| || || ||||| || | || || | || Sbjct 6862 CAGCACATGATCATGCGCGTGGCGGTCGGGATCTGGGGCGACAACGTGGAGCGCGTCCTG 6803 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | ||||| || || || ||||| |||||||| | || | Sbjct 6802 GAGACGTACAACTACATGTCCAACAAGTTCTTCACACACGCGTCGCCCACGCTTTTCAAC 6743 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || ||||| | | || | | ||||| || || | |||| || |||||| Sbjct 6742 GCTGGCACGCCCCAAGCCCAGCTCGCGTCGTGCTTCCTGGTTGACATGAAGGATGACAGC 6683 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGC-G 7801 || || ||||| ||| |||| || | || |||||| | || ||||| ||||||| | Sbjct 6682 ATTGAGGGCATCTACGACACCCT-CAAGACTTGCGCTATGATCTCCAAG-ACGGCGGGTG 6625 Query 7802 GAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACG 7861 | || || ||||||| || | | ||||||| || ||| | |||||||| Sbjct 6624 GCATCGGGATGAACGTCCACCGCATCCGCGCCACTGGCTCATACATTGCCGGCACCAACG 6565 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | | ||| ||| | | || ||| ||||||||||||| ||| ||| || |||| | Sbjct 6564 GTACATCCAACGGCATTGTCCCTATGCTGCGCGTGTTCAACAACACGGCCCGCTATGTGG 6505 Query 7922 ACCAGGGGGGA---AAGCGCAAAGGCGCC-GCTGCCATCTATTTGGAGCCGTGGCACGCG 7977 ||||||| ||| ||||| ||||||| ||| |||||| ||||||||||||| || Sbjct 6504 ACCAGGGTGGAAACAAGCGGCCAGGCGCCTTCTG-CATCTACCTGGAGCCGTGGCATGCT 6446 Query 7978 GACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCG-- 8034 ||| | | || | || | ||| ||||| | | || | || || | ||| Sbjct 6445 GACGTGTTCGAGTTCCTCGACCTG---CGCAAGAACCATGGCAAGGAGGAGGTACGCGCC 6389 Query 8035 CGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGAC 8094 ||||| || ||| | | | ||| | || || ||||| |||| ||| || | || Sbjct 6388 CGCGACCTGTTCCTGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAAGAAC 6329 Query 8095 GCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCA 8154 | | ||| |||| ||||||||| || ||||| | || ||||| Sbjct 6328 GGCGACTGGACGCTGATGTGCCCCAATGAGTGCCCGGGTCTGGCCGACTGCTACGGCGAC 6269 Query 8155 AAATTTGAACAATTGTACAAACAATACGAACACGACGG-CGCGTACGTGCGGCAAGTGAA 8213 | || || |||||| | | ||||| | || || || | ||| || || || Sbjct 6268 GAGTTCGAGGCCTTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCGT-CGCACGGTCAA 6210 Query 8214 AGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACAT 8273 || | | ||| ||| | | || || | || ||||| | |||| ||| Sbjct 6209 GGCCCAGAAGCTGTGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCGTTCAT 6150 Query 8274 GCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTG 8333 ||||||||| ||| |||||| ||| ||||| || | ||| |||||||||| | | Sbjct 6149 GCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAG 6090 Query 8334 CAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393 | ||| |||||| | || ||| | ||||| |||||||||| || ||||| || ||||| Sbjct 6089 CTCCAACCTGTGCACAGAGATTATCGAGTACTGCGCGCCCGATGAGGTGGCGGTGTGCAA 6030 Query 8394 TCTAGCGTCGGTG 8406 || ||||| || Sbjct 6029 CCTGTCGTCGCTG 6017 >seq204 Length=21219 Score = 122 bits (134), Expect = 9e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||| ||||| || |||||||||||| | |||| | Sbjct 5902 AGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 5843 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| |||||||| |||||||| ||||| || Sbjct 5842 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 5783 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || ||||| || || || Sbjct 5782 TTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTG 5723 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | || || ||||| || ||||| ||| Sbjct 5722 ATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 5681 >seq23 Length=165582 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||||| | ||| | Sbjct 62212 AGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGG 62153 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||||||||| |||| |||||||| || ||||| ||||| || Sbjct 62152 CCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 62093 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || || || || | ||| Sbjct 62092 TTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTG 62033 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 ||||| || || || | || || |||||| Sbjct 62032 ATGGTCTTGCCCGTCAGGGTCTTCACGAAA 62003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505392688998080