Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq233 109 5e-19
seq23 82.4 6e-11
>seq233
Length=18884
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| ||||||| || | |||| || | ||| || || || ||||| ||||||||||
Sbjct 1803 TGCCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGC 1862
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
||| | |||| |||| || ||||| || || || | ||||| ||||| || |||||||
Sbjct 1863 TCAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCG 1922
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| ||||| ||||| || | | | || | ||||| | | || |
Sbjct 1923 GGATGCCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCA 1982
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| || || || || | ||||| || || || || || ||||||||||||
Sbjct 1983 CCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCATA 2032
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| ||||||| || | |||| || | ||| || || ||||| |||||||||
Sbjct 1575 TGCCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGG 1634
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | ||| | || || ||||| || || ||| |||| || ||||| || |||||||
Sbjct 1635 ACAGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCG 1694
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| || || |||||| || | | | || | ||||| || || |
Sbjct 1695 GGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCA 1754
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || || || || | ||||||||||| || || |||||||| |||||
Sbjct 1755 CCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803
>seq23
Length=165582
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||||| |||| |||| || | || || || || || || ||||||||| |
Sbjct 62221 CCACCGCGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 62162
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | || |||| || ||||| || || || | || || ||||| || ||||||||
Sbjct 62161 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 62102
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| || || ||||||| || | | || | ||||| | || || ||
Sbjct 62101 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 62042
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAA 27238
|| | ||| || | ||||||||||| || ||||| ||
Sbjct 62041 TCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 62004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424929718285248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |