Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq376 114 4e-20 seq1 111 5e-19 >seq376 Length=8930 Score = 114 bits (126), Expect = 4e-20 Identities = 368/551 (67%), Gaps = 34/551 (6%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||| | || ||| | || |||||||||||| ||| ||||| || || || || || Sbjct 6554 CGGCATTGTCCCTATGCTGCGCGTGTTCAACAACACGGCCCGCTATGTGGACCAGGGTGG 6495 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 ||| || ||||| || ||| ||||||||||||||||||||| || ||| || || Sbjct 6494 AAACAAGCGGCCAGGCGCCTTCTGCATCTACCTGGAGCCGTGGCATGCTGAC-GTGTTCG 6436 Query 255091 -GTTTTTACTGCTGTCCGACAAGACC---GGCACCGAGGAGCTGATCGCCCGCGACATCT 255146 ||| | ||| || ||||| | |||| |||||| | |||||||||| | | Sbjct 6435 AGTTCCTCGACCTG--CG-CAAGAACCATGGCAAGGAGGAGGTACGCGCCCGCGACCTGT 6379 Query 255147 ACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGG 255205 | || ||||| | || ||||| ||| || ||||| | || ||| |||| Sbjct 6378 TCCTGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAAGA-ACGGCGACTGG 6320 Query 255206 AGCCTCATGTGTCCCAACTTATCGCCC-GGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264 | || ||||| ||||| | | |||| ||||| | ||||| | || |||||||| || Sbjct 6319 ACGCTGATGTGCCCCAA-TGAGTGCCCGGGTCTGGCCGACTGCTACGGCGACGAGTTCGA 6261 Query 255265 AAAACTGTATCTGGAGTACGA----GCGTGCC--GGCCGGTTCGTAC-GCCAAGTGCCCG 255317 |||| | ||||||| | | ||| ||||| ||| || | |||| |||| Sbjct 6260 GGCCTTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCG--TCGCACGGTCAAG-GCCC- 6205 Query 255318 CGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTAT 255377 ||||| | ||| | | | || |||| ||| ||||| | |||||| | Sbjct 6204 ---AGAAGCTGTGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCGTTCATGC 6148 Query 255378 TGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGC 255436 || |||| |||||| || |||| | | ||||| ||| || || || ||| || Sbjct 6147 TGTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGCACCATCCGCAGC 6089 Query 255437 TCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGC---AAGAGGTGGCCGTTTGC 255493 || ||||||||||| ||||||| | || | |||| | |||||||| || ||| Sbjct 6088 TCCAACCTGTGCACAGAGATTATCGAGTAC---TGCGCGCCCGATGAGGTGGCGGTGTGC 6032 Query 255494 AACTTGGCGTC 255504 ||| || |||| Sbjct 6031 AACCTGTCGTC 6021 >seq1 Length=398088 Score = 111 bits (122), Expect = 5e-19 Identities = 122/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || ||||| || |||| ||||| || | || || |||||| ||||| | ||| Sbjct 36649 AGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC-GCTTTCTCGTCC 36707 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| |||| ||||| || || |||| ||| |||||||| ||||| |||||| Sbjct 36708 ATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATC 36767 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 || |||||||| |||| |||||||||||| || || Sbjct 36768 TCGCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCT 36808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588317603098280