Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq376 114 4e-20
seq1 111 5e-19
>seq376
Length=8930
Score = 114 bits (126), Expect = 4e-20
Identities = 368/551 (67%), Gaps = 34/551 (6%)
Strand=Plus/Minus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
||||||| | || ||| | || |||||||||||| ||| ||||| || || || || ||
Sbjct 6554 CGGCATTGTCCCTATGCTGCGCGTGTTCAACAACACGGCCCGCTATGTGGACCAGGGTGG 6495
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090
||| || ||||| || ||| ||||||||||||||||||||| || ||| || ||
Sbjct 6494 AAACAAGCGGCCAGGCGCCTTCTGCATCTACCTGGAGCCGTGGCATGCTGAC-GTGTTCG 6436
Query 255091 -GTTTTTACTGCTGTCCGACAAGACC---GGCACCGAGGAGCTGATCGCCCGCGACATCT 255146
||| | ||| || ||||| | |||| |||||| | |||||||||| | |
Sbjct 6435 AGTTCCTCGACCTG--CG-CAAGAACCATGGCAAGGAGGAGGTACGCGCCCGCGACCTGT 6379
Query 255147 ACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGG 255205
| || ||||| | || ||||| ||| || ||||| | || ||| ||||
Sbjct 6378 TCCTGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAAGA-ACGGCGACTGG 6320
Query 255206 AGCCTCATGTGTCCCAACTTATCGCCC-GGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264
| || ||||| ||||| | | |||| ||||| | ||||| | || |||||||| ||
Sbjct 6319 ACGCTGATGTGCCCCAA-TGAGTGCCCGGGTCTGGCCGACTGCTACGGCGACGAGTTCGA 6261
Query 255265 AAAACTGTATCTGGAGTACGA----GCGTGCC--GGCCGGTTCGTAC-GCCAAGTGCCCG 255317
|||| | ||||||| | | ||| ||||| ||| || | |||| ||||
Sbjct 6260 GGCCTTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCG--TCGCACGGTCAAG-GCCC- 6205
Query 255318 CGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTAT 255377
||||| | ||| | | | || |||| ||| ||||| | |||||| |
Sbjct 6204 ---AGAAGCTGTGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCGTTCATGC 6148
Query 255378 TGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGC 255436
|| |||| |||||| || |||| | | ||||| ||| || || || ||| ||
Sbjct 6147 TGTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGCACCATCCGCAGC 6089
Query 255437 TCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGC---AAGAGGTGGCCGTTTGC 255493
|| ||||||||||| ||||||| | || | |||| | |||||||| || |||
Sbjct 6088 TCCAACCTGTGCACAGAGATTATCGAGTAC---TGCGCGCCCGATGAGGTGGCGGTGTGC 6032
Query 255494 AACTTGGCGTC 255504
||| || ||||
Sbjct 6031 AACCTGTCGTC 6021
>seq1
Length=398088
Score = 111 bits (122), Expect = 5e-19
Identities = 122/161 (76%), Gaps = 1/161 (1%)
Strand=Plus/Plus
Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766
|||| || ||||| || |||| ||||| || | || || |||||| ||||| | |||
Sbjct 36649 AGCGTCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC-GCTTTCTCGTCC 36707
Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826
||||||||| |||| ||||| || || |||| ||| |||||||| ||||| ||||||
Sbjct 36708 ATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATC 36767
Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867
|| |||||||| |||| |||||||||||| || ||
Sbjct 36768 TCGCGTGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCT 36808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588317603098280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |