Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq376 168 8e-37 seq444 82.4 1e-10 >seq376 Length=8930 Score = 168 bits (186), Expect = 8e-37 Identities = 1125/1780 (63%), Gaps = 51/1780 (3%) Strand=Plus/Plus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 ||||||| || || | ||| ||| | | || || |||||||| ||||||||||||| Sbjct 5110 TGAACTGGATCGGCTGCGCTGCCGCTTGCGTGCGCAGGTAGTACATACCGGTCTTGAGTC 5169 Query 110391 CTTGTTTCCATGC-GTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATG 110449 | ||||| | ||| | |||||| | | |||| ||| || || |||| Sbjct 5170 CCAACTTCCAGCCCGTAAA-ATGCATGCTGGTAATCTTGCCCATAGTCGGTGCGCGCATG 5228 Query 110450 AAGAGGTTCAT--ACTTTGACTTTGGTCAATGAA-GCGCCCCCGTTGTGCCGCCATAT-- 110504 | ||| | ||| |||| |||| ||||| ||||| | || | |||||||| | Sbjct 5229 TGAATGTTGAGCGACTGCGACT--GGTCGATGAACGCGCCACGGTCG-GCCGCCATCTGC 5285 Query 110505 -CAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCT 110563 |||| | | | | | || ||||| ||||| || || |||||| ||| | Sbjct 5286 ACAAT--CGTGCG-CTGCGAGATCTCCCACACTGTCTTGTACAGCGCCTTGATTTCAGCC 5342 Query 110564 GGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCC 110623 ||||| | | ||| ||||||| || || ||| | | ||| | | |||||| | Sbjct 5343 GGGATGTTCGGGATGTTCTGGACCGACCCGCCCTCTGCAATGATGCGGTTCTTCATGTTG 5402 Query 110624 TTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAAC 110683 | ||||| || || || | | ||||| || | || |||||| | ||| Sbjct 5403 TCCGACCACAGGCCCATGTCCACCAGGTCCTTCAGAAGCCATGGGTTGACCACCTGGAAC 5462 Query 110684 TCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTA 110743 || ||||| || | | | |||||||||| | |||||||| || |||||||| || Sbjct 5463 TCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGAAGCATTCGTTG 5522 Query 110744 TTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGA 110803 || |||| ||| || | ||| || || || ||||| || |||| ||| |||||||| || Sbjct 5523 TTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAACAGACTGTTGCGC 5582 Query 110804 AGACCCTTCTCCTTGATGCGTTCCTTGAGAA-CA-----TCCCAGTCGTAGTTGAGCTT- 110856 | || | ||||||||| ||||||| || |||||||| | | | | Sbjct 5583 ACGCCGTGCTCCTTGAT------CTTGAGACGCAGCGAGTCCCAGTCCCACAGGTCCGTC 5636 Query 110857 GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAA 110916 || || || | ||||||| |||||||| || | || || ||| ||||||| ||||| | Sbjct 5637 GGCTTGACGT-CCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAGACCCCTCGTA 5695 Query 110917 GGTTTCATAGGAACCTTGG-GCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGAT 110975 || || || | ||||| |||| || || |||| ||| | ||||| | Sbjct 5696 CGTCGAGTACACGCCCTCCAGCTTC-GCCAGGTCGCATGACGCCGTCAGCGCAGCGTGGT 5754 Query 110976 ACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGC 111035 | || || |||||||| | || | ||| || || || ||||| | | | | Sbjct 5755 AGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGCGCCTCCGGCGACTCAAAAG-GCATC 5813 Query 111036 GGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGC 111094 ||| | | || ||||||| | || || ||||||| ||| || || | ||| ||| Sbjct 5814 CGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGGCCGGTGACGC 5873 Query 111095 ATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 111154 || || || ||||| | || || || | || ||| |||| ||||| || Sbjct 5874 ATGTTGCTGTTGCGCGCCTCCGGCACAGGGTAGTAGTTGACGTCGATGATACGGTTCAGG 5933 Query 111155 TTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT 111214 || || | || |||| || ||||| || | | || | || | | Sbjct 5934 TTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGTCGTACGTCTCGTTGGCG 5993 Query 111215 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 111274 | | ||| | || || || | || | || ||||| || ||| |||||| Sbjct 5994 TAGTCCACAAAAGACGGCAGCGCCAGCGACGACAGGTTGCACACCGCCACCTCATCGGGC 6053 Query 111275 TCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 111334 | |||||| | ||| ||||| || | |||||| || || || |||| ||||| Sbjct 6054 GCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTC 6113 Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 111394 ||||| ||||| |||||| |||||||| |||||| | || | || ||||||||| Sbjct 6114 TGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTC 6173 Query 111395 TGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTC 111452 || | | || | || | ||| | | || | | || | || | ||| |||| || | Sbjct 6174 TGCGCCTCCAGGACGGCATACCACAGCTTCTGGGCCTTG-ACCGT-GCGACGGCCACGGC 6231 Query 111453 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 111512 ||||| ||||||||| ||| | ||| || ||||| || || ||||| |||| Sbjct 6232 CCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCGTAGCAGTCGGCCAGAC 6291 Query 111513 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGA 111572 | || || | || || | || | ||| | || | ||| || |||||||||| Sbjct 6292 CCGGGCACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGA 6351 Query 111573 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTT 111632 | ||||| || ||||| || | || || || | || |||| || | || | Sbjct 6352 ACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTGCCAT 6411 Query 111633 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 111692 |||| || | || |||||||| | | || || ||||| ||||| || |||| || Sbjct 6412 GGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGA-TG 6470 Query 111693 CGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAA 111746 | || || | | ||| ||| | || | |||||||| || ||| ||| | Sbjct 6471 CAGAAGGCGCC--TGGCCGCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTGTTGTTGA 6528 Query 111747 ATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT 111806 | ||||| ||||| || | ||| || | ||| ||| || || || ||| || Sbjct 6529 ACACGCGCAGCATAGGGACAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTATGAGC 6588 Query 111807 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTG 111864 | |||| | | |||| || |||||| || || || ||| ||| ||||| | | Sbjct 6589 CAGTGGCGCGGATGCGGTGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATAG 6648 Query 111865 CGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAG 111924 |||| | | | | || || | ||||| || | || ||| ||||| || | | || Sbjct 6649 CGCA-AGT-CTTGAGGGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAG 6706 Query 111925 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984 |||||| | | ||| | | || || ||||| ||||| || || || | ||||| Sbjct 6707 GAAGCACGACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTG 6766 Query 111985 AATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCC 112043 |||| | || | | |||||| | || ||| ||||||| ||| || | || || | Sbjct 6767 TGTGAAGA-ACTTGTTGGACATGTAGTTGTACGTCTCCAGGACGCGCTCCACGTTGTCGC 6825 Query 112044 CGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | ||| |||| || || ||||||| ||||| ||| || Sbjct 6826 CCCAGATCCCGACCGCCACGCGCATGATCATGTGCTGGGG 6865 >seq444 Length=208719 Score = 82.4 bits (90), Expect = 1e-10 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| | ||| || ||||| || ||||| | || || || | | | ||| || | | Sbjct 204343 GCCGATCGCGTCGATCTCGTCGATGAAAATGATGCACGGCGCACTCTTGCGCGCCGTCGC 204284 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CG 11740 ||| |||||||| |||| || ||||| || ||||||||||||||||| | | | Sbjct 204283 AAACAGATCGCGCACCCGCGACGCGCCCACGCCCACAAACATCTCCACAAACTCCGACCC 204224 Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 || || | || || ||| || || || || || || |||| ||| || || ||| Sbjct 204223 GCTGA-CGCT-GAAGAACGGCACCCCCGACTCGCCGGCCGTGGCCTTGGCCAGCAGCGTC 204166 Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || |||||||| || || || || | ||||| || |||||||||||||| Sbjct 204165 TTGCCCGTACCCGGTGGCCCGGCCAGGATCGCGCCGCGCGGGATCTTGGCACC 204113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024903238400