Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq376 168 8e-37
seq444 82.4 1e-10
>seq376
Length=8930
Score = 168 bits (186), Expect = 8e-37
Identities = 1125/1780 (63%), Gaps = 51/1780 (3%)
Strand=Plus/Plus
Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390
||||||| || || | ||| ||| | | || || |||||||| |||||||||||||
Sbjct 5110 TGAACTGGATCGGCTGCGCTGCCGCTTGCGTGCGCAGGTAGTACATACCGGTCTTGAGTC 5169
Query 110391 CTTGTTTCCATGC-GTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATG 110449
| ||||| | ||| | |||||| | | |||| ||| || || ||||
Sbjct 5170 CCAACTTCCAGCCCGTAAA-ATGCATGCTGGTAATCTTGCCCATAGTCGGTGCGCGCATG 5228
Query 110450 AAGAGGTTCAT--ACTTTGACTTTGGTCAATGAA-GCGCCCCCGTTGTGCCGCCATAT-- 110504
| ||| | ||| |||| |||| ||||| ||||| | || | |||||||| |
Sbjct 5229 TGAATGTTGAGCGACTGCGACT--GGTCGATGAACGCGCCACGGTCG-GCCGCCATCTGC 5285
Query 110505 -CAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCT 110563
|||| | | | | | || ||||| ||||| || || |||||| ||| |
Sbjct 5286 ACAAT--CGTGCG-CTGCGAGATCTCCCACACTGTCTTGTACAGCGCCTTGATTTCAGCC 5342
Query 110564 GGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCC 110623
||||| | | ||| ||||||| || || ||| | | ||| | | |||||| |
Sbjct 5343 GGGATGTTCGGGATGTTCTGGACCGACCCGCCCTCTGCAATGATGCGGTTCTTCATGTTG 5402
Query 110624 TTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAAC 110683
| ||||| || || || | | ||||| || | || |||||| | |||
Sbjct 5403 TCCGACCACAGGCCCATGTCCACCAGGTCCTTCAGAAGCCATGGGTTGACCACCTGGAAC 5462
Query 110684 TCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTA 110743
|| ||||| || | | | |||||||||| | |||||||| || |||||||| ||
Sbjct 5463 TCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGAAGCATTCGTTG 5522
Query 110744 TTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGA 110803
|| |||| ||| || | ||| || || || ||||| || |||| ||| |||||||| ||
Sbjct 5523 TTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAACAGACTGTTGCGC 5582
Query 110804 AGACCCTTCTCCTTGATGCGTTCCTTGAGAA-CA-----TCCCAGTCGTAGTTGAGCTT- 110856
| || | ||||||||| ||||||| || |||||||| | | | |
Sbjct 5583 ACGCCGTGCTCCTTGAT------CTTGAGACGCAGCGAGTCCCAGTCCCACAGGTCCGTC 5636
Query 110857 GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAA 110916
|| || || | ||||||| |||||||| || | || || ||| ||||||| ||||| |
Sbjct 5637 GGCTTGACGT-CCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAGACCCCTCGTA 5695
Query 110917 GGTTTCATAGGAACCTTGG-GCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGAT 110975
|| || || | ||||| |||| || || |||| ||| | ||||| |
Sbjct 5696 CGTCGAGTACACGCCCTCCAGCTTC-GCCAGGTCGCATGACGCCGTCAGCGCAGCGTGGT 5754
Query 110976 ACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGC 111035
| || || |||||||| | || | ||| || || || ||||| | | | |
Sbjct 5755 AGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGCGCCTCCGGCGACTCAAAAG-GCATC 5813
Query 111036 GGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGC 111094
||| | | || ||||||| | || || ||||||| ||| || || | ||| |||
Sbjct 5814 CGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGGCCGGTGACGC 5873
Query 111095 ATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 111154
|| || || ||||| | || || || | || ||| |||| ||||| ||
Sbjct 5874 ATGTTGCTGTTGCGCGCCTCCGGCACAGGGTAGTAGTTGACGTCGATGATACGGTTCAGG 5933
Query 111155 TTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT 111214
|| || | || |||| || ||||| || | | || | || | |
Sbjct 5934 TTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGTCGTACGTCTCGTTGGCG 5993
Query 111215 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 111274
| | ||| | || || || | || | || ||||| || ||| ||||||
Sbjct 5994 TAGTCCACAAAAGACGGCAGCGCCAGCGACGACAGGTTGCACACCGCCACCTCATCGGGC 6053
Query 111275 TCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 111334
| |||||| | ||| ||||| || | |||||| || || || |||| |||||
Sbjct 6054 GCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTC 6113
Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 111394
||||| ||||| |||||| |||||||| |||||| | || | || |||||||||
Sbjct 6114 TGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTC 6173
Query 111395 TGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTC 111452
|| | | || | || | ||| | | || | | || | || | ||| |||| || |
Sbjct 6174 TGCGCCTCCAGGACGGCATACCACAGCTTCTGGGCCTTG-ACCGT-GCGACGGCCACGGC 6231
Query 111453 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 111512
||||| ||||||||| ||| | ||| || ||||| || || ||||| ||||
Sbjct 6232 CCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCGTAGCAGTCGGCCAGAC 6291
Query 111513 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGA 111572
| || || | || || | || | ||| | || | ||| || ||||||||||
Sbjct 6292 CCGGGCACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGA 6351
Query 111573 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTT 111632
| ||||| || ||||| || | || || || | || |||| || | || |
Sbjct 6352 ACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTGCCAT 6411
Query 111633 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 111692
|||| || | || |||||||| | | || || ||||| ||||| || |||| ||
Sbjct 6412 GGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGA-TG 6470
Query 111693 CGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAA 111746
| || || | | ||| ||| | || | |||||||| || ||| ||| |
Sbjct 6471 CAGAAGGCGCC--TGGCCGCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTGTTGTTGA 6528
Query 111747 ATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT 111806
| ||||| ||||| || | ||| || | ||| ||| || || || ||| ||
Sbjct 6529 ACACGCGCAGCATAGGGACAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTATGAGC 6588
Query 111807 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTG 111864
| |||| | | |||| || |||||| || || || ||| ||| ||||| | |
Sbjct 6589 CAGTGGCGCGGATGCGGTGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATAG 6648
Query 111865 CGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAG 111924
|||| | | | | || || | ||||| || | || ||| ||||| || | | ||
Sbjct 6649 CGCA-AGT-CTTGAGGGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAG 6706
Query 111925 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984
|||||| | | ||| | | || || ||||| ||||| || || || | |||||
Sbjct 6707 GAAGCACGACGCGAGCTGGGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTG 6766
Query 111985 AATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCC 112043
|||| | || | | |||||| | || ||| ||||||| ||| || | || || |
Sbjct 6767 TGTGAAGA-ACTTGTTGGACATGTAGTTGTACGTCTCCAGGACGCGCTCCACGTTGTCGC 6825
Query 112044 CGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
| ||| |||| || || ||||||| ||||| ||| ||
Sbjct 6826 CCCAGATCCCGACCGCCACGCGCATGATCATGTGCTGGGG 6865
>seq444
Length=208719
Score = 82.4 bits (90), Expect = 1e-10
Identities = 160/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682
||| | ||| || ||||| || ||||| | || || || | | | ||| || | |
Sbjct 204343 GCCGATCGCGTCGATCTCGTCGATGAAAATGATGCACGGCGCACTCTTGCGCGCCGTCGC 204284
Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CG 11740
||| |||||||| |||| || ||||| || ||||||||||||||||| | | |
Sbjct 204283 AAACAGATCGCGCACCCGCGACGCGCCCACGCCCACAAACATCTCCACAAACTCCGACCC 204224
Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800
|| || | || || ||| || || || || || || |||| ||| || || |||
Sbjct 204223 GCTGA-CGCT-GAAGAACGGCACCCCCGACTCGCCGGCCGTGGCCTTGGCCAGCAGCGTC 204166
Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853
|| |||||||| || || || || | ||||| || ||||||||||||||
Sbjct 204165 TTGCCCGTACCCGGTGGCCCGGCCAGGATCGCGCCGCGCGGGATCTTGGCACC 204113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628024903238400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |