Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq376 183 4e-41 seq1 105 8e-18 >seq376 Length=8930 Score = 183 bits (202), Expect = 4e-41 Identities = 1068/1689 (63%), Gaps = 45/1689 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| || |||||||| ||| ||||||| | | |||||| || Sbjct 5142 CGCAGGTAGTACATACCGGTCTTGAGTCCCAACTTCCAGCCCGTAAAATGCATGCTGGTA 5201 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA- 117955 | |||| | || || |||| | ||| | || || || |||||||| Sbjct 5202 ATCTTGCCCATAGTCGGTGCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAC 5261 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTC 118013 ||| || || || |||||||| | | || ||| | | | ||| |||||||| ||| Sbjct 5262 GCG-CCACGGTCGGCCGCCATCTGCA-CA-ATCGTGCGCTGCGAGATCTCCCACACTGTC 5318 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| || ||| || ||| | ||||| | | ||| || |||| || || ||| | Sbjct 5319 TTGTACAGCGCCTTGATTTCAGCCGGGATGTTCGGGATGTTCTGGACCGACCCGCCCTCT 5378 Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | ||| | | |||||| | | ||||| || || || | || |||| || Sbjct 5379 GCAATGATGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTTCAGA 5438 Query 118134 AG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 || ||| | |||| || ||||| || || || || | | | ||||| |||| Sbjct 5439 AGCCATGGGT--TGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGG 5496 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 |||||||||||| ||||| || ||||| |||| ||| || | || || || || |||| Sbjct 5497 ACGTGTATGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCA 5556 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGA---- 118307 | || |||| | || ||||| || | || | ||| | || ||||||| Sbjct 5557 TCGGCGCCACCAACAGACTGTTGCGCACGCCGTGCTCCTTGAT------CTTGAGACGCA 5610 Query 118308 --GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 118365 | ||||||||| | | | | | || | | ||||||||||||||| ||||| | Sbjct 5611 GCGAGTCCCAGTCCCACAGGTCCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATGC 5670 Query 118366 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG 118425 | || ||| | || || ||||| | ||| || |||||| | || ||||| ||| Sbjct 5671 CCTGCGACACGGGAGACCCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGC 5730 Query 118426 AGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG 118485 | |||| || || ||||| || || || ||||| || | || | | | Sbjct 5731 ATGACGCCGTCAGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGCG 5790 Query 118486 CCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACA 118544 |||| || ||||| | | || ||| | | || ||||||| | || |||||| Sbjct 5791 CCTCCGGCGACTCAAAAGGCA-TCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACA 5849 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAA 118604 || | || || || || || | ||| || || || || | ||| || || | Sbjct 5850 CCCACACCGATCGGCCGGTGACGCATGTTGCTGTTGCGCGCCTCCGGCACAGGGTAGTAG 5909 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664 || ||||| | | || || || || |||| |||| || |||||||| Sbjct 5910 TTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTC 5969 Query 118665 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 118724 | | | || | | | | | | ||| | || || || | |||| ||| Sbjct 5970 TGGAAGTCGTACGTCTCGTTGGCGTAGTCCACAAAAGACGGCAGCGCCAGCGACGACAGG 6029 Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 || ||||| | |||||| | |||||| ||||| || ||||||| ||| || Sbjct 6030 TTGCACACCGCCACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAG 6089 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 || |||||||||| |||||| || || ||| ||| || |||||||| ||| Sbjct 6090 CTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGC 6149 Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGC 118903 ||| | || | || |||||||| || | || || | || | ||| | | || | | Sbjct 6150 ATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACAGCTTCTGGGCC 6209 Query 118904 TGGCACAGTGGCGTTGGCT-CGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 118962 | | || ||| || ||| || ||||| | ||||||||| ||| | ||| || |||| Sbjct 6210 TTG-ACCGTG-CGACGGCCACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACT 6267 Query 118963 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 119022 | || || | || | || || || || || ||||| | || | ||| | | Sbjct 6268 CGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCCAGTCGC 6327 Query 119023 CACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCC 119082 | || ||| || ||||||||||| ||||| ||||||||||||||| ||| || || | Sbjct 6328 CGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGC 6387 Query 119083 GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 119142 | ||| | || || | || || || |||| || | || || | | || | Sbjct 6388 GGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCAG 6447 Query 119143 CGTGCCACGGTTCCAGGT------ACACCGCGATTGACCCCTTACGACGACCAGCCTGGT 119196 | |||||||| ||||||| | | ||| || || ||| ||| |||||| Sbjct 6448 CATGCCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTT---GTTTCCACCCTGGT 6504 Query 119197 TTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGC 119256 ||||| | || ||| ||| || || || ||||| || | || || | |||| | Sbjct 6505 CCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTAC 6564 Query 119257 CATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAAT 119314 | || || || || || ||| | | |||| | || ||||| || ||| || || Sbjct 6565 CGTTGGTGCCGGCAATGTATGAGCC--AGTGGCGCGGATGCGGTGGACGTTCATCCCGAT 6622 Query 119315 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 119374 || || ||| ||| ||||| ||||| | |||| || ||||||| || || || Sbjct 6623 GCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCCCTCAAT 6682 Query 119375 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT-GGGTGTACCAG 119433 |||| |||| | | | |||||||| || | || ||| | ||| || |||| Sbjct 6683 GCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCTG-GGCTTGGGGCGTGCCAG 6741 Query 119434 CGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTC 119492 ||||||| || || || | |||||| |||| | || | | |||||| | || ||| ||| Sbjct 6742 CGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGTACGTC 6800 Query 119493 TCCAAGACG 119501 |||| |||| Sbjct 6801 TCCAGGACG 6809 >seq1 Length=398088 Score = 105 bits (116), Expect = 8e-18 Identities = 296/453 (65%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || |||||||| |||||||| ||||| ||| ||| | ||| |||||||| Sbjct 37087 TAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 37028 Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGC---TGGCACTCCAATCTGTTTGAGGA 129842 || ||||| ||||| | ||| | || ||| || | || | || | Sbjct 37027 AAGTCAAAGGGGTTGCTCGAGCGGTACACCTTGTCGTTGCCGAGAGAAACC-----AGCA 36973 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT 129902 | ||||| | || |||||||||||| ||| | |||||||| || | ||| Sbjct 36972 GGCGATCGGCCACAAACTCAATGTACTGCTTCATGAGCGTCGAGTTCATGCCCAGCAGGG 36913 Query 129903 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGG 129962 || || || || || || |||| ||| ||| || | || || || | |||| Sbjct 36912 CGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGCATCGACGATGATGT 36853 Query 129963 CGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | | ||| || | ||| || | || || | ||| || ||| || | Sbjct 36852 CCTCAATAACCTTCTTGCTGGGGCGGTTCTTCAGATGGGAGAACAGCAGGCAGGCGAAGT 36793 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || ||||||||||| ||||| || || || |||||| ||| || ||||| | Sbjct 36792 CGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCA 36733 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | || |||||||||| |||||| || | | || | ||| ||||||||| ||||| | Sbjct 36732 GGCCGCGCTTCTTCAGCCAGAAGATGGACGAGAAAGCGCCGCTGAAGAAGATGCCCTCGA 36673 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 | ||||| || | ||||||| ||||||| Sbjct 36672 CGGCAGCGAATGCGACCAGACGCTGCGCAAAGG 36640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428211682240