Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq376 183 4e-41
seq1 105 8e-18
>seq376
Length=8930
Score = 183 bits (202), Expect = 4e-41
Identities = 1068/1689 (63%), Gaps = 45/1689 (3%)
Strand=Plus/Plus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| ||||||||||| || |||||||| ||| ||||||| | | |||||| ||
Sbjct 5142 CGCAGGTAGTACATACCGGTCTTGAGTCCCAACTTCCAGCCCGTAAAATGCATGCTGGTA 5201
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA- 117955
| |||| | || || |||| | ||| | || || || ||||||||
Sbjct 5202 ATCTTGCCCATAGTCGGTGCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAC 5261
Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTC 118013
||| || || || |||||||| | | || ||| | | | ||| |||||||| |||
Sbjct 5262 GCG-CCACGGTCGGCCGCCATCTGCA-CA-ATCGTGCGCTGCGAGATCTCCCACACTGTC 5318
Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073
|||| || ||| || ||| | ||||| | | ||| || |||| || || ||| |
Sbjct 5319 TTGTACAGCGCCTTGATTTCAGCCGGGATGTTCGGGATGTTCTGGACCGACCCGCCCTCT 5378
Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133
| ||| | | |||||| | | ||||| || || || | || |||| ||
Sbjct 5379 GCAATGATGCGGTTCTTCATGTTGTCCGACCACAGGCCCATGTCCACCAGGTCCTTCAGA 5438
Query 118134 AG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191
|| ||| | |||| || ||||| || || || || | | | ||||| ||||
Sbjct 5439 AGCCATGGGT--TGACCACCTGGAACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGG 5496
Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251
|||||||||||| ||||| || ||||| |||| ||| || | || || || || ||||
Sbjct 5497 ACGTGTATGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCA 5556
Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGA---- 118307
| || |||| | || ||||| || | || | ||| | || |||||||
Sbjct 5557 TCGGCGCCACCAACAGACTGTTGCGCACGCCGTGCTCCTTGAT------CTTGAGACGCA 5610
Query 118308 --GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 118365
| ||||||||| | | | | | || | | ||||||||||||||| ||||| |
Sbjct 5611 GCGAGTCCCAGTCCCACAGGTCCGTCGGCTTGACGTCCCACATATCAAACTGCAGGATGC 5670
Query 118366 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG 118425
| || ||| | || || ||||| | ||| || |||||| | || ||||| |||
Sbjct 5671 CCTGCGACACGGGAGACCCCTCGTACGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGC 5730
Query 118426 AGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG 118485
| |||| || || ||||| || || || ||||| || | || | | |
Sbjct 5731 ATGACGCCGTCAGCGCAGCGTGGTAGATCGTCTCAAAGATCTGCTTGTTGAGCTCACGCG 5790
Query 118486 CCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACA 118544
|||| || ||||| | | || ||| | | || ||||||| | || ||||||
Sbjct 5791 CCTCCGGCGACTCAAAAGGCA-TCCGCAGCGCCAGGAACGCATCCGCCAAGCCCTGGACA 5849
Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAA 118604
|| | || || || || || | ||| || || || || | ||| || || |
Sbjct 5850 CCCACACCGATCGGCCGGTGACGCATGTTGCTGTTGCGCGCCTCCGGCACAGGGTAGTAG 5909
Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664
|| ||||| | | || || || || |||| |||| || ||||||||
Sbjct 5910 TTGACGTCGATGATACGGTTCAGGTTGCGCACCACCACCTGCGTGACCTCGTGAAGCTTC 5969
Query 118665 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 118724
| | | || | | | | | | ||| | || || || | |||| |||
Sbjct 5970 TGGAAGTCGTACGTCTCGTTGGCGTAGTCCACAAAAGACGGCAGCGCCAGCGACGACAGG 6029
Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784
|| ||||| | |||||| | |||||| ||||| || ||||||| ||| ||
Sbjct 6030 TTGCACACCGCCACCTCATCGGGCGCGCAGTACTCGATAATCTCTGTGCACAGGTTGGAG 6089
Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844
|| |||||||||| |||||| || || ||| ||| || |||||||| |||
Sbjct 6090 CTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGC 6149
Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGC 118903
||| | || | || |||||||| || | || || | || | ||| | | || | |
Sbjct 6150 ATGAACGGGTTGCCGGTCTCCGTCTGCGCCTCCAGGACGGCATACCACAGCTTCTGGGCC 6209
Query 118904 TGGCACAGTGGCGTTGGCT-CGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 118962
| | || ||| || ||| || ||||| | ||||||||| ||| | ||| || ||||
Sbjct 6210 TTG-ACCGTG-CGACGGCCACGGCCCTCCTTCTCGTACTTCTCGTACAAGGCCTCGAACT 6267
Query 118963 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 119022
| || || | || | || || || || || ||||| | || | ||| | |
Sbjct 6268 CGTCGCCGTAGCAGTCGGCCAGACCCGGGCACTCATTGGGGCACATCAGCGTCCAGTCGC 6327
Query 119023 CACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCC 119082
| || ||| || ||||||||||| ||||| ||||||||||||||| ||| || || |
Sbjct 6328 CGTTCTTCTCCACACGCTTCATGAACAGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGC 6387
Query 119083 GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 119142
| ||| | || || | || || || |||| || | || || | | || |
Sbjct 6388 GGGCGCGTACCTCCTCCTTGCCATGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCAG 6447
Query 119143 CGTGCCACGGTTCCAGGT------ACACCGCGATTGACCCCTTACGACGACCAGCCTGGT 119196
| |||||||| ||||||| | | ||| || || ||| ||| ||||||
Sbjct 6448 CATGCCACGGCTCCAGGTAGATGCAGAAGGCGCCTGGCCGCTT---GTTTCCACCCTGGT 6504
Query 119197 TTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGC 119256
||||| | || ||| ||| || || || ||||| || | || || | |||| |
Sbjct 6505 CCACATAGCGGGCCGTGTTGTTGAACACGCGCAGCATAGGGACAATGCCGTTGGATGTAC 6564
Query 119257 CATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAAT 119314
| || || || || || ||| | | |||| | || ||||| || ||| || ||
Sbjct 6565 CGTTGGTGCCGGCAATGTATGAGCC--AGTGGCGCGGATGCGGTGGACGTTCATCCCGAT 6622
Query 119315 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 119374
|| || ||| ||| ||||| ||||| | |||| || ||||||| || || ||
Sbjct 6623 GCCACCCGCCGTCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCGTAGATGCCCTCAAT 6682
Query 119375 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT-GGGTGTACCAG 119433
|||| |||| | | | |||||||| || | || ||| | ||| || ||||
Sbjct 6683 GCTGTCATCCTTCATGTCAACCAGGAAGCACGACGCGAGCTG-GGCTTGGGGCGTGCCAG 6741
Query 119434 CGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTC 119492
||||||| || || || | |||||| |||| | || | | |||||| | || ||| |||
Sbjct 6742 CGTTGAAAAGCGTGGGCGACGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGTACGTC 6800
Query 119493 TCCAAGACG 119501
|||| ||||
Sbjct 6801 TCCAGGACG 6809
>seq1
Length=398088
Score = 105 bits (116), Expect = 8e-18
Identities = 296/453 (65%), Gaps = 10/453 (2%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| || || |||||||| |||||||| ||||| ||| ||| | ||| ||||||||
Sbjct 37087 TAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 37028
Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGC---TGGCACTCCAATCTGTTTGAGGA 129842
|| ||||| ||||| | ||| | || ||| || | || | || |
Sbjct 37027 AAGTCAAAGGGGTTGCTCGAGCGGTACACCTTGTCGTTGCCGAGAGAAACC-----AGCA 36973
Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT 129902
| ||||| | || |||||||||||| ||| | |||||||| || | |||
Sbjct 36972 GGCGATCGGCCACAAACTCAATGTACTGCTTCATGAGCGTCGAGTTCATGCCCAGCAGGG 36913
Query 129903 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGG 129962
|| || || || || || |||| ||| ||| || | || || || | ||||
Sbjct 36912 CGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGCATCGACGATGATGT 36853
Query 129963 CGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022
| | ||| || | ||| || | || || | ||| || ||| || |
Sbjct 36852 CCTCAATAACCTTCTTGCTGGGGCGGTTCTTCAGATGGGAGAACAGCAGGCAGGCGAAGT 36793
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||| || ||||||||||| ||||| || || || |||||| ||| || ||||| |
Sbjct 36792 CGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCA 36733
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
| || |||||||||| |||||| || | | || | ||| ||||||||| ||||| |
Sbjct 36732 GGCCGCGCTTCTTCAGCCAGAAGATGGACGAGAAAGCGCCGCTGAAGAAGATGCCCTCGA 36673
Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
| ||||| || | ||||||| |||||||
Sbjct 36672 CGGCAGCGAATGCGACCAGACGCTGCGCAAAGG 36640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618428211682240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |