Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq376 286 4e-72 seq184 129 6e-25 seq1 116 4e-21 >seq376 Length=8930 Score = 286 bits (316), Expect = 4e-72 Identities = 525/762 (69%), Gaps = 8/762 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 |||||||||| || | || ||| || ||| || ||| |||| ||||||||| Sbjct 6852 TCATGCGCGTGGCGGTCGGGATCTGGGGCGACAACGTGGAGCGCGTCCTGGAGACGTACA 6793 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| | | |||| ||| || ||||| |||| || || ||||||||||| ||| Sbjct 6792 ACTACATGTCCAACAAGTTCTTCACACACGCGTCGCCCACGCTTTTCAACGCTGGCACGC 6733 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | ||| | || ||||||||||| | |||||||||||| || || |||| Sbjct 6732 CCCAAGCCCAGCTCGCGTCGTGCTTCCTGGTTGACATGAAGGATGACAGCATTGAGGGCA 6673 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| || || ||||||||| | ||||||| ||||| || Sbjct 6672 TCTACGACACCCTCAAGACTTGCGCTATGATCTCCAAGACGGCGGGTGGCATCGGGATGA 6613 Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || | || |||| || | ||| || || || || ||||| || | Sbjct 6612 ACG--TCCACCGCATCCGCGCCACTGGCTCATACATTGCCGGCACCAACGGTACATCCAA 6555 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || || |||||||| ||||| ||||||||||||||||| || || |||||||||| Sbjct 6554 CGGCATTGTCCCTATGCTGCGCGTGTTCAACAACACGGCCCGCTATGTGGACCAGGGTGG 6495 Query 53551 TGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 ||||| | ||| | | ||| ||||||||| ||||||||||| || ||| | | | Sbjct 6494 AAACAAGCGGCCAGGCGCC-TTCTGCATCTACCTGGAGCCGTGGCATGCTGACGTGTTCG 6436 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| ||||| ||| || || | || ||| | ||| ||| |||||||| Sbjct 6435 AGTTCCTCGACCTGCGCAAGAACCATGGCAAGGAGGAGGTACGCGCCCGCGACCTGTTCC 6376 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || ||||| |||||||| |||||| | ||||||||| ||| || ||| | Sbjct 6375 TGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGACTGGACGC 6316 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 |||||||||| || |||||||| || || | | || |||||| || ||||| | | Sbjct 6315 TGATGTGCCCCAATGAGTGCCCGGGTCTGGCCGACTG-CTACGGCGACGAGTTCGAGGCC 6257 Query 53789 ATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 |||| || ||||| ||||||| | | ||||||||| | || | Sbjct 6256 TTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCGTCGCACGGTCAAGGCCCAGAAGCTG 6197 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908 ||| |||| |||| || ||| |||||| || | |||| |||| |||||||| Sbjct 6196 TGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCGTTCATGCTGTACAAGGAC 6137 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 |||| |||||||||||||||||| | ||| |||| Sbjct 6136 CACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 6095 Score = 176 bits (194), Expect = 5e-39 Identities = 568/854 (67%), Gaps = 42/854 (5%) Strand=Plus/Minus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||||||||| || |||| || ||| || ||||||||||| ||||| Sbjct 5977 GACTTCCAGAAGCTTCACGAGGTCACGCAGGTGGTGGTGCGCAACCTGAACCGTATCATC 5918 Query 55157 GACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCC 55213 ||| || |||||||| | | || ||||||||| |||| | || |||||||| Sbjct 5917 GACGTCAACTACTACCCTGTGCCGGA---GGCGCGCAACAGCAACATGCGTCACCGGCCG 5861 Query 55214 ATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT-CGGATTGCCCTTCGA 55272 |||| | ||||| ||||||||||| || ||| || ||| ||||| ||| || || Sbjct 5860 ATCGGTGTGGGTGTCCAGGGCTTGGCGGATGCGTTCCTGGCGCTGCGGAT-GCCTTTTGA 5802 Query 55273 CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGC 55331 ||| || || || | ||| || | ||||| || || |||||| || |||| Sbjct 5801 GTCGCCGGAGGCGCGTGAGCTCAACAAGCAGATCTTTGAGACG-ATCTACCACGCTGCGC 5743 Query 55332 TCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGC 55391 | || ||| || | ||||| | | ||||| ||| ||||| | | || | Sbjct 5742 TGACGGCGTCATGCGACCTGGCGAAGCTGGAGGGCGTGTACTCGACGTACGAGGGGTCTC 5683 Query 55392 CAGCTGACA-AGGGACTTCTCCAGTTCGATCTATGGGGC---AAGTCTGACCC-CATGTT 55446 | | || | |||| | || ||||| ||| | |||| | ||| | ||| | ||| Sbjct 5682 CCG-TGTCGCAGGGCATCCTGCAGTTTGATATGTGGGACGTCAAGCC-GACGGACCTGTG 5625 Query 55447 TGACAAG---TTGAAGCATGACATTCACTTGTGG---GGCCTACGCAACTCCCTGCTCGT 55500 ||| | | | || | || | | | ||| | |||||| ||| | || Sbjct 5624 GGACTGGGACTCGCTGCGTCTCAAGATCAAGGAGCACGGCGTGCGCAACAGTCTGTTGGT 5565 Query 55501 GGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCC 55560 |||||| ||||| || || ||||| | |||||| ||||||||||||| |||||||| Sbjct 5564 GGCGCCGATGCCGACGGCATCGACCTCGCAGATCCTGGGCAACAACGAATGCTTCGAGCC 5505 Query 55561 GTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAA 55620 |||||| |||||||||||| |||||| || ||||| ||||| || ||||| Sbjct 5504 ATACACGTCCAACATCTACCAGCGCCGTGTGCTGGCAGGCGAGTTCCAGGTGGTCAACCC 5445 Query 55621 GCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA--CGGAT 55678 || | ||||||||| | | || | |||| | || |||| || || Sbjct 5444 ATGGCTTCTGAAGGACCTGGTGGACATGGGCCTGTGGTCGGACAACATGAAGAACCGCAT 5385 Query 55679 ATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGATTCC--TCTGCGTCTCAAGGA 55734 | ||| | | || ||||| ||||||| ||| || ||| ||| |||||| Sbjct 5384 CAT-TGCAG-AGGGCGGGTCGGTCCAGAACATCCCGAACATCCCGGCTG-AAATCAAGGC 5328 Query 55735 GATTTACCGGACGGTGTGGGAGATTCCACAG---AAGAGTCTGATTGACATGAGTGCTGA 55791 | | ||| ||| ||||||||||| | ||| | || | || | ||| || || Sbjct 5327 GCTGTACAAGACAGTGTGGGAGATCTCGCAGCGCACGATTGTG---CAGATGGCGGCCGA 5271 Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATCCTTCAC 55850 ||||| |||| |||||||||||| ||||| || ||||| |||| | | | || | Sbjct 5270 CCGTGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGCGCGCA-CCGACTA 5212 Query 55851 TGGCCAAGTTGAGCTCGATGCACTTTTACGGG-TGGAAGAAGGGACTCAAGACGGGTATG 55909 ||| |||| | | | ||||| ||||||||| |||||| |||||||||||| |||||| Sbjct 5211 TGGGCAAGATTACCAGCATGCA-TTTTACGGGCTGGAAGTTGGGACTCAAGACCGGTATG 5153 Query 55910 TACTATCTGCGGAC 55923 ||||| ||||| || Sbjct 5152 TACTACCTGCGCAC 5139 >seq184 Length=23895 Score = 129 bits (142), Expect = 6e-25 Identities = 212/304 (70%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350 |||| | || ||||||||||||||||| | ||| |||||||| ||| |||| ||||| Sbjct 16223 ACGGCGAAAGACGAGTGAAAATGTAACGGGCGCTGGCAGCATCAGAGCCTCCAGAAAGAC 16282 Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410 | | |||||| | || || ||||| | | ||| | |||||||| || || || || | Sbjct 16283 GAGAACCGAAGTTACCGCTAGGCTCGAGAATGTTGACGTTGTTGGACCCAACGAAATTCT 16342 Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470 | ||||| ||| || || ||||| || ||||| ||||| ||||| | | | Sbjct 16343 GCGCCAACCCGACGATGGTCTGGTGGAGAGAGGCATCACCGTGGTGGTACGCAGCCAATT 16402 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAG 117528 || ||| || ||||||| | ||||||| ||| |||| | ||||||||||| Sbjct 16403 TCGACACCATACCAGCCAGCTCAAACACCTTCTGGTCCTTGAC--AATGTTCTTCTTGAA 16460 Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGA 117588 ||||| || || ||||| ||||| | ||||| | || || ||| |||||||| Sbjct 16461 GCAGGTGTAGATAACCTTCCGCTGTCCCGGCTTGAACCCGTCAAGAACGGACGGGATCGA 16520 Query 117589 ACGC 117592 ||| Sbjct 16521 CCGC 16524 Score = 100 bits (110), Expect = 3e-16 Identities = 294/447 (66%), Gaps = 12/447 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 |||||||| ||||| || ||||| |||| |||| ||| || || | || || || | Sbjct 16084 CCGGTACCAATGCCGTCGGCACCATTGATGAGAACCATGGGAACCACCGGCGCATAGTTC 16143 Query 151936 TCCGGCTCCACCTGTTGAC-CGTCATCCATCAC-GTATTTC---AAAACGGAATTGTCAG 151990 ||||||| | |||| | || | | ||| || ||| | ||| | | ||| Sbjct 16144 ACCGGCTCAA-----TGACGCTTCCTTCGTCAATGTTGTTCTCGAGAACCGGTTCGTCCA 16198 Query 151991 CCGGATCGAATATCCGTCGAGTCATAGGACTCAA-ACGCGTGAAGATGTATCGGGAGCTG 152049 || | ||| | || |||| || | | | || ||| ||||| ||||| |||| |||| Sbjct 16199 TCGCGTTGAAAACACGGCGAG-CAAACGGCGAAAGACGAGTGAAAATGTAACGGGCGCTG 16257 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 || ||||| ||| || | || || | || || | || |||||||| | |||| Sbjct 16258 GCAGCATCAGAGCCTCCAGAAAGACGAGAACCGAAGTTACCGCTAGGCTCGAGAATGTTG 16317 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 | |||||||| || ||||||||||| ||||| || || || || ||| || Sbjct 16318 ACGTTGTTGGACCCAACGAAATTCTGCGCCAACCCGACGATGGTCTGGTGGAGAGAGGCA 16377 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 ||||||||||| ||||| | | | || | || |||| || ||||||| | Sbjct 16378 TCACCGTGGTGGTACGCAGCCAATTTCGACACCATACCAGCCAGCTCAAACACCTTCTGG 16437 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| | | ||||||||||| |||| ||| || ||||| ||||| || || || Sbjct 16438 TCCTTGACAATGTTCTTCTTGAAGCAGGTGTAGATAACCTTCCGCTGTCCCGGCTTGAAC 16497 Query 152290 CCGTCCACCACGTGAGGAATCGAACGC 152316 ||||| | ||| || ||||| ||| Sbjct 16498 CCGTCAAGAACGGACGGGATCGACCGC 16524 >seq1 Length=398088 Score = 116 bits (128), Expect = 4e-21 Identities = 304/454 (67%), Gaps = 16/454 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| ||||| ||||||||||| || ||| |||||||||||||| Sbjct 37087 TAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 37028 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 |||| || ||||| | | | ||| | | | | | | || | | ||| |||| Sbjct 37027 AAGTCAAAGGGGTTGCTCGAGCGGTACACCTTGTCGT-TGCCGAGAGAAA-CCAGCAGGC 36970 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 |||| |||||||| | |||||||||| |||| || | |||||| | || || Sbjct 36969 GATCGGCCACAAACTCAATGTACTGCTTCATGAGCGTCGAGTTCATGCCCAGCAGGGCGC 36910 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTT 74698 | ||||| |||||||||| ||||| ||| | || | || || | || || | Sbjct 36909 AGGGCAGAGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGC--ATCGACGATGATGTC 36852 Query 74699 GTGAATGTCTTT---GGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754 | ||| | || | |||| || | |||| || ||| | ||| | || ||| | Sbjct 36851 CTCAATAACCTTCTTGCTGGGGCGGTTCT---TCAGATGGGAGAACAGCAGGCA-GGCGA 36796 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||| || || | |||| || || || || | ||||| |||| Sbjct 36795 AGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCA 36736 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || |||||||||| ||| ||||||| |||| | || |||||||||||||| | Sbjct 36735 TCAGGCCGCGCTTCTTCAGCCAGAAGATGGACGAGAAAGCGCCGCTGAAGAAGATGCCCT 36676 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| || || ||||| || || ||||| || Sbjct 36675 CGACGGCAGCGAATGCGACCAGACGCTGCGCAAA 36642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209816459200