Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq376 286 4e-72
seq184 129 6e-25
seq1 116 4e-21
>seq376
Length=8930
Score = 286 bits (316), Expect = 4e-72
Identities = 525/762 (69%), Gaps = 8/762 (1%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
|||||||||| || | || ||| || ||| || ||| |||| |||||||||
Sbjct 6852 TCATGCGCGTGGCGGTCGGGATCTGGGGCGACAACGTGGAGCGCGTCCTGGAGACGTACA 6793
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
||| ||| | | |||| ||| || ||||| |||| || || ||||||||||| |||
Sbjct 6792 ACTACATGTCCAACAAGTTCTTCACACACGCGTCGCCCACGCTTTTCAACGCTGGCACGC 6733
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| | ||| | || ||||||||||| | |||||||||||| || || ||||
Sbjct 6732 CCCAAGCCCAGCTCGCGTCGTGCTTCCTGGTTGACATGAAGGATGACAGCATTGAGGGCA 6673
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| || |||||| || || ||||||||| | ||||||| ||||| ||
Sbjct 6672 TCTACGACACCCTCAAGACTTGCGCTATGATCTCCAAGACGGCGGGTGGCATCGGGATGA 6613
Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| || | || |||| || | ||| || || || || ||||| || |
Sbjct 6612 ACG--TCCACCGCATCCGCGCCACTGGCTCATACATTGCCGGCACCAACGGTACATCCAA 6555
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| || || |||||||| ||||| ||||||||||||||||| || || ||||||||||
Sbjct 6554 CGGCATTGTCCCTATGCTGCGCGTGTTCAACAACACGGCCCGCTATGTGGACCAGGGTGG 6495
Query 53551 TGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609
||||| | ||| | | ||| ||||||||| ||||||||||| || ||| | | |
Sbjct 6494 AAACAAGCGGCCAGGCGCC-TTCTGCATCTACCTGGAGCCGTGGCATGCTGACGTGTTCG 6436
Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669
|||| ||||| ||||| ||| || || | || ||| | ||| ||| ||||||||
Sbjct 6435 AGTTCCTCGACCTGCGCAAGAACCATGGCAAGGAGGAGGTACGCGCCCGCGACCTGTTCC 6376
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
|| || ||||| |||||||| |||||| | ||||||||| ||| || ||| |
Sbjct 6375 TGGCGCTCTGGATCCCGGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGACTGGACGC 6316
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788
|||||||||| || |||||||| || || | | || |||||| || ||||| | |
Sbjct 6315 TGATGTGCCCCAATGAGTGCCCGGGTCTGGCCGACTG-CTACGGCGACGAGTTCGAGGCC 6257
Query 53789 ATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848
|||| || ||||| ||||||| | | ||||||||| | || |
Sbjct 6256 TTGTACGAGAAGTACGAGAAGGAGGGCCGTGGCCGTCGCACGGTCAAGGCCCAGAAGCTG 6197
Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908
||| |||| |||| || ||| |||||| || | |||| |||| ||||||||
Sbjct 6196 TGGTATGCCGTCCTGGAGGCGCAGACGGAGACCGGCAACCCGTTCATGCTGTACAAGGAC 6137
Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950
|||| |||||||||||||||||| | ||| ||||
Sbjct 6136 CACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 6095
Score = 176 bits (194), Expect = 5e-39
Identities = 568/854 (67%), Gaps = 42/854 (5%)
Strand=Plus/Minus
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||||||||||| || |||| || ||| || ||||||||||| |||||
Sbjct 5977 GACTTCCAGAAGCTTCACGAGGTCACGCAGGTGGTGGTGCGCAACCTGAACCGTATCATC 5918
Query 55157 GACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCC 55213
||| || |||||||| | | || ||||||||| |||| | || ||||||||
Sbjct 5917 GACGTCAACTACTACCCTGTGCCGGA---GGCGCGCAACAGCAACATGCGTCACCGGCCG 5861
Query 55214 ATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT-CGGATTGCCCTTCGA 55272
|||| | ||||| ||||||||||| || ||| || ||| ||||| ||| || ||
Sbjct 5860 ATCGGTGTGGGTGTCCAGGGCTTGGCGGATGCGTTCCTGGCGCTGCGGAT-GCCTTTTGA 5802
Query 55273 CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGC 55331
||| || || || | ||| || | ||||| || || |||||| || ||||
Sbjct 5801 GTCGCCGGAGGCGCGTGAGCTCAACAAGCAGATCTTTGAGACG-ATCTACCACGCTGCGC 5743
Query 55332 TCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGC 55391
| || ||| || | ||||| | | ||||| ||| ||||| | | || |
Sbjct 5742 TGACGGCGTCATGCGACCTGGCGAAGCTGGAGGGCGTGTACTCGACGTACGAGGGGTCTC 5683
Query 55392 CAGCTGACA-AGGGACTTCTCCAGTTCGATCTATGGGGC---AAGTCTGACCC-CATGTT 55446
| | || | |||| | || ||||| ||| | |||| | ||| | ||| | |||
Sbjct 5682 CCG-TGTCGCAGGGCATCCTGCAGTTTGATATGTGGGACGTCAAGCC-GACGGACCTGTG 5625
Query 55447 TGACAAG---TTGAAGCATGACATTCACTTGTGG---GGCCTACGCAACTCCCTGCTCGT 55500
||| | | | || | || | | | ||| | |||||| ||| | ||
Sbjct 5624 GGACTGGGACTCGCTGCGTCTCAAGATCAAGGAGCACGGCGTGCGCAACAGTCTGTTGGT 5565
Query 55501 GGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCC 55560
|||||| ||||| || || ||||| | |||||| ||||||||||||| ||||||||
Sbjct 5564 GGCGCCGATGCCGACGGCATCGACCTCGCAGATCCTGGGCAACAACGAATGCTTCGAGCC 5505
Query 55561 GTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAA 55620
|||||| |||||||||||| |||||| || ||||| ||||| || |||||
Sbjct 5504 ATACACGTCCAACATCTACCAGCGCCGTGTGCTGGCAGGCGAGTTCCAGGTGGTCAACCC 5445
Query 55621 GCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA--CGGAT 55678
|| | ||||||||| | | || | |||| | || |||| || ||
Sbjct 5444 ATGGCTTCTGAAGGACCTGGTGGACATGGGCCTGTGGTCGGACAACATGAAGAACCGCAT 5385
Query 55679 ATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGATTCC--TCTGCGTCTCAAGGA 55734
| ||| | | || ||||| ||||||| ||| || ||| ||| ||||||
Sbjct 5384 CAT-TGCAG-AGGGCGGGTCGGTCCAGAACATCCCGAACATCCCGGCTG-AAATCAAGGC 5328
Query 55735 GATTTACCGGACGGTGTGGGAGATTCCACAG---AAGAGTCTGATTGACATGAGTGCTGA 55791
| | ||| ||| ||||||||||| | ||| | || | || | ||| || ||
Sbjct 5327 GCTGTACAAGACAGTGTGGGAGATCTCGCAGCGCACGATTGTG---CAGATGGCGGCCGA 5271
Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATCCTTCAC 55850
||||| |||| |||||||||||| ||||| || ||||| |||| | | | || |
Sbjct 5270 CCGTGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGCGCGCA-CCGACTA 5212
Query 55851 TGGCCAAGTTGAGCTCGATGCACTTTTACGGG-TGGAAGAAGGGACTCAAGACGGGTATG 55909
||| |||| | | | ||||| ||||||||| |||||| |||||||||||| ||||||
Sbjct 5211 TGGGCAAGATTACCAGCATGCA-TTTTACGGGCTGGAAGTTGGGACTCAAGACCGGTATG 5153
Query 55910 TACTATCTGCGGAC 55923
||||| ||||| ||
Sbjct 5152 TACTACCTGCGCAC 5139
>seq184
Length=23895
Score = 129 bits (142), Expect = 6e-25
Identities = 212/304 (70%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350
|||| | || ||||||||||||||||| | ||| |||||||| ||| |||| |||||
Sbjct 16223 ACGGCGAAAGACGAGTGAAAATGTAACGGGCGCTGGCAGCATCAGAGCCTCCAGAAAGAC 16282
Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410
| | |||||| | || || ||||| | | ||| | |||||||| || || || || |
Sbjct 16283 GAGAACCGAAGTTACCGCTAGGCTCGAGAATGTTGACGTTGTTGGACCCAACGAAATTCT 16342
Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470
| ||||| ||| || || ||||| || ||||| ||||| ||||| | | |
Sbjct 16343 GCGCCAACCCGACGATGGTCTGGTGGAGAGAGGCATCACCGTGGTGGTACGCAGCCAATT 16402
Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAG 117528
|| ||| || ||||||| | ||||||| ||| |||| | |||||||||||
Sbjct 16403 TCGACACCATACCAGCCAGCTCAAACACCTTCTGGTCCTTGAC--AATGTTCTTCTTGAA 16460
Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGA 117588
||||| || || ||||| ||||| | ||||| | || || ||| ||||||||
Sbjct 16461 GCAGGTGTAGATAACCTTCCGCTGTCCCGGCTTGAACCCGTCAAGAACGGACGGGATCGA 16520
Query 117589 ACGC 117592
|||
Sbjct 16521 CCGC 16524
Score = 100 bits (110), Expect = 3e-16
Identities = 294/447 (66%), Gaps = 12/447 (3%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|||||||| ||||| || ||||| |||| |||| ||| || || | || || || |
Sbjct 16084 CCGGTACCAATGCCGTCGGCACCATTGATGAGAACCATGGGAACCACCGGCGCATAGTTC 16143
Query 151936 TCCGGCTCCACCTGTTGAC-CGTCATCCATCAC-GTATTTC---AAAACGGAATTGTCAG 151990
||||||| | |||| | || | | ||| || ||| | ||| | | |||
Sbjct 16144 ACCGGCTCAA-----TGACGCTTCCTTCGTCAATGTTGTTCTCGAGAACCGGTTCGTCCA 16198
Query 151991 CCGGATCGAATATCCGTCGAGTCATAGGACTCAA-ACGCGTGAAGATGTATCGGGAGCTG 152049
|| | ||| | || |||| || | | | || ||| ||||| ||||| |||| ||||
Sbjct 16199 TCGCGTTGAAAACACGGCGAG-CAAACGGCGAAAGACGAGTGAAAATGTAACGGGCGCTG 16257
Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109
|| ||||| ||| || | || || | || || | || |||||||| | ||||
Sbjct 16258 GCAGCATCAGAGCCTCCAGAAAGACGAGAACCGAAGTTACCGCTAGGCTCGAGAATGTTG 16317
Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169
| |||||||| || ||||||||||| ||||| || || || || ||| ||
Sbjct 16318 ACGTTGTTGGACCCAACGAAATTCTGCGCCAACCCGACGATGGTCTGGTGGAGAGAGGCA 16377
Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229
||||||||||| ||||| | | | || | || |||| || ||||||| |
Sbjct 16378 TCACCGTGGTGGTACGCAGCCAATTTCGACACCATACCAGCCAGCTCAAACACCTTCTGG 16437
Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289
||| | | ||||||||||| |||| ||| || ||||| ||||| || || ||
Sbjct 16438 TCCTTGACAATGTTCTTCTTGAAGCAGGTGTAGATAACCTTCCGCTGTCCCGGCTTGAAC 16497
Query 152290 CCGTCCACCACGTGAGGAATCGAACGC 152316
||||| | ||| || ||||| |||
Sbjct 16498 CCGTCAAGAACGGACGGGATCGACCGC 16524
>seq1
Length=398088
Score = 116 bits (128), Expect = 4e-21
Identities = 304/454 (67%), Gaps = 16/454 (4%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || ||||| ||||| ||||| ||||||||||| || ||| ||||||||||||||
Sbjct 37087 TAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 37028
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580
|||| || ||||| | | | ||| | | | | | | || | | ||| ||||
Sbjct 37027 AAGTCAAAGGGGTTGCTCGAGCGGTACACCTTGTCGT-TGCCGAGAGAAA-CCAGCAGGC 36970
Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640
|||| |||||||| | |||||||||| |||| || | |||||| | || ||
Sbjct 36969 GATCGGCCACAAACTCAATGTACTGCTTCATGAGCGTCGAGTTCATGCCCAGCAGGGCGC 36910
Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTT 74698
| ||||| |||||||||| ||||| ||| | || | || || | || || |
Sbjct 36909 AGGGCAGAGCCTCGGTGAGGAACTCCTGCTCGATCTTGACGGC--ATCGACGATGATGTC 36852
Query 74699 GTGAATGTCTTT---GGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754
| ||| | || | |||| || | |||| || ||| | ||| | || ||| |
Sbjct 36851 CTCAATAACCTTCTTGCTGGGGCGGTTCT---TCAGATGGGAGAACAGCAGGCA-GGCGA 36796
Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814
| || ||| ||| || || | |||| || || || || | ||||| ||||
Sbjct 36795 AGTCGGTGTGCAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCA 36736
Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874
| || || |||||||||| ||| ||||||| |||| | || |||||||||||||| |
Sbjct 36735 TCAGGCCGCGCTTCTTCAGCCAGAAGATGGACGAGAAAGCGCCGCTGAAGAAGATGCCCT 36676
Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
|||| || || ||||| || || ||||| ||
Sbjct 36675 CGACGGCAGCGAATGCGACCAGACGCTGCGCAAA 36642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547209816459200
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