Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq376 378 8e-100 seq233 156 5e-33 seq23 141 1e-28 seq204 132 5e-26 seq184 127 2e-24 seq1 93.3 5e-14 >seq376 Length=8930 Score = 378 bits (418), Expect = 8e-100 Identities = 945/1420 (67%), Gaps = 38/1420 (3%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || || || ||| | || | ||| | ||||| ||||| || ||| Sbjct 5460 AACTCGCCTGCCAGCACACGGCGCTGGTAGATGTTGGACGTGTATGGCTCGAAGCATTCG 5519 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || |||||||| | || |||||||||||||| | |||||||| || Sbjct 5520 TTGTTGCCCAGGATCTGCGAGGTCGATGCCGTCGGCATCGGCGCCACCAACAGACTGTTG 5579 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCA---AATCTGA--CCAAAAATCAACCCCAA 80530 |||| |||||||| |||||| | |||| | || | || | || || Sbjct 5580 CGCACGCCGTGCTCCTTGATCTTGAGACGCAGCGAGTCCCAGTCCCA----CAGGTCCGT 5635 Query 80531 CGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAA 80588 || |||| ||||||| || ||||| |||||||| |||| | ||||||||| || | Sbjct 5636 CGGCTTGACGTCCCACATATCAAACTGCAGGATGCCCTGCGACACGGGAGACCCCTCGTA 5695 Query 80589 CGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATA 80648 |||| |||| ||||||| ||| ||||| || || ||| || | || || ||||| || Sbjct 5696 CGTCGAGTACACGCCCTCCAGCTTCGCCAGGTCGCATGACGCCGTCAGCGCAGCGTGGTA 5755 Query 80649 AATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCC 80708 || |||||||| |||||| | | ||||||| || || || | || | Sbjct 5756 GATCGTCTCAAAGATCTGCTTGTTGAGCTCACGCGCCTCCGGCGACTCAAAAGGCATCCG 5815 Query 80709 CATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTT 80768 || | || |||| | || |||| |||||| || || | ||||||| ||||| ||| | Sbjct 5816 CAGCGCCAGGAACGCATCCGCCAAGCCCTGGACACCCACACCGATCGGCCGGTGACGCAT 5875 Query 80769 GTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGT 80827 ||| | | || || ||||||| | ||||| |||| ||||||| |||||||||| Sbjct 5876 GTTGCTGTTGCGCG-CCTCCGGCACAGGGTAGTAGTTGACGTCGATGATACGGTTCAGGT 5934 Query 80828 TGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCT 80884 |||| || ||| | || || || ||||| ||||| |||||| | | ||| | | Sbjct 5935 TGCGCACCACCACCTGCGTGACCTCGTGAAGCTTCTGGAAGTCGTACGTCTCGTTGGCGT 5994 Query 80885 T---CACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941 |||||| | ||| || ||| |||| ||| |||||||| |||||||| || | Sbjct 5995 AGTCCACAAAAGACGGCAGCGCCAGCGACGACAGGTTGCACACCGCCACCTCATCGGGCG 6054 Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCT 81001 | |||||| || || ||||||| || || || || |||||||| |||| Sbjct 6055 CGCAGTACTCGATAATCTCTGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCT 6114 Query 81002 GGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCT 81061 |||| |||| |||||| ||||||||| |||| ||||| | |||||||| || Sbjct 6115 GGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCGGTCTCCGTCT 6174 Query 81062 GTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTT 81121 | | || |||| ||| | ||| | || | ||||||||| ||| ||| | Sbjct 6175 GCGCCTCCAGGACGGCATACCACAGCTTCTGGGCCTTGACCGTGCGACGGCCACGGCCCT 6234 Query 81122 CGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCT 81180 | | | ||||| |||| | ||||||| | | |||| | ||| | | || | Sbjct 6235 CCTTCTCGTACTTCTCGTACAAGGCCTCGAACTCGTCGCCGTAGCAGT-CGGCCAGACCC 6293 Query 81181 GGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAA 81240 |||||||| || ||||||||||| ||||||| || ||||| ||| ||||||||| Sbjct 6294 GGGCACTCATTGGGGCACATCAGCGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAC 6353 Query 81241 GCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGG 81300 ||| ||||||||||| || ||||||||||||| ||| ||||||| | || ||| Sbjct 6354 AGGTCCGGGATCCAGAGCGCCAGGAACAGGTCGCGGGCGCGTACCTCCTCCTTGCCATGG 6413 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360 || ||||| ||||| || || | | ||| |||||||| |||||||| || | | | Sbjct 6414 TTCTTGCGCAGGTCGAGGAACTCGAACACGTCAGCATGCCACGGCTCCAGGTAGATGCAG 6473 Query 81361 ATCGACCCCTTGCGAC----GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATAC 81416 | | | ||| || | |||||||||| || || ||||| || ||| || || Sbjct 6474 A-AGGCGCCTGGCCGCTTGTTTCCACCCTGGTCCACATAGCGGGCCGTGTTGTTGAACAC 6532 Query 81417 ACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTT 81476 |||| |||||||| || || | || |||||| || || | || || || | Sbjct 6533 GCGCAGCATAGGGACAATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTATGAGCCAGT 6592 Query 81477 GGCGCGCACCTTGCTGATTGA----AAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532 |||||| | ||| | | || | ||||||||||| | | ||| || ||| || Sbjct 6593 GGCGCGGA---TGC-GGTGGACGTTCATCCCGATGCCACCCGCCGTCTTGGAGATCATAG 6648 Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592 | || || | ||| || || || ||||| ||||| || | |||||||||| || || Sbjct 6649 CGCAAGTCTTGAGGGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATGTCAACCAGGA 6708 Query 81593 AACAGCTTGACATCTGAGGGCTT--TTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 | || | | || |||||| | ||| || ||||| || || || | |||||| Sbjct 6709 AGCACGACGCGAGCT--GGGCTTGGGGCGTGCCAGCGTTGAAAAGCGTGGGCGACGCGTG 6766 Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710 |||| | ||| ||||| || || || ||| |||||| | | ||| || Sbjct 6767 TGTGAAGAACTTGTTGGACATGTAGTTGTACGTCTCCAGGACGCGCTCCACGTTGTCGCC 6826 Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGGC 81750 || |||| || || ||||| | ||||| ||||||| Sbjct 6827 CCAGATCCCGACCGCCACGCGCATGATCATGTGCTGGGGC 6866 >seq233 Length=18884 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||||||||| ||||||||||| || || || ||||| ||||| Sbjct 2031 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 1972 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || |||||||| |||||||| || || || |||||| Sbjct 1971 GACACGATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCGCCGGACCAG 1912 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || ||||| || ||||| || ||||| | ||| ||||| ||| ||||| || Sbjct 1911 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACCCTGAGC-GACTACAA 1853 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || || | ||||| |||||||| Sbjct 1852 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGTGG 1805 Score = 152 bits (168), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| ||||||||||| ||||||||||| || || || ||||| ||||| Sbjct 2262 ATCATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACCCTGGAGGTGGAGTCG 2203 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | || | ||| | || ||||||||||||||||| || || || ||| Sbjct 2202 TCGGACACGATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGAC 2143 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581 |||||||| || || ||||| || ||||| || ||||||| || || || ||| ||||| Sbjct 2142 CAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGC-GACTA 2084 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || || || || || || | || || ||||| || Sbjct 2083 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGCGG 2033 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| ||||| || ||||| ||| | Sbjct 1803 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1744 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 1743 GACACGATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1684 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| || ||||||| || || || | ||||| || Sbjct 1683 CAGCGGCTGATTTTCGCGGGCAAGCAGCTGGAGGATGGGCGGACGCTGTCCGACTACAAC 1624 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| || || || || | ||||| |||||||| Sbjct 1623 ATTCAGAAGGAGAGCACGCTGCACCTGGTGCTCCGTCTGCGCGGTGG 1577 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| ||||| || ||||| ||| | Sbjct 1575 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTCGAGGTGGAGAGCAGC 1516 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || |||||||||||||| || || || |||||| Sbjct 1515 GACACGATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAG 1456 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || || || | ||||| || Sbjct 1455 CAGCGGCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGGCGGACGCTGTCGGACTACAAC 1396 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| || || || || |||| || || ||||| || Sbjct 1395 ATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGGCTGCGGGGTGGGCA 1346 >seq23 Length=165582 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || ||| | ||||| ||||| || | || Sbjct 62004 TTCGTGAAGACCCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 62063 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| || Sbjct 62064 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTG 62123 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || ||||| || ||||| || ||||| | || ||||| | ||||| || |||| ||| Sbjct 62124 ATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAACATCCAGAAG 62183 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| || || || ||||||| |||||||| Sbjct 62184 GAGTCGACTCTGCACCTGGTGCTGCGTCTGCGCGGTGG 62221 >seq204 Length=21219 Score = 132 bits (146), Expect = 5e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || |||||||| ||| || | Sbjct 5685 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAG--AGCT 5742 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || | ||| | ||| | || || |||||||||||||| || || || |||| Sbjct 5743 CGGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACC 5802 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||||| || || || || || ||||| |||||||| | || ||||| | ||||| | Sbjct 5803 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACA 5862 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| ||| || || || || |||| || || || || Sbjct 5863 ACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGCCTGCGTGGCGG 5911 >seq184 Length=23895 Score = 127 bits (140), Expect = 2e-24 Identities = 284/421 (67%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC-CTGTC 32042 ||||| ||||||| |||||| ||||| || ||| ||||| ||||||||||| |||| Sbjct 16502 GACGGGTTCAAGCCGGGACAGCGGAAGGTTATCTACACCTGCTTCAAGAAGAACATTGTC 16443 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 || ||| ||||||| ||||| | || ||| | | | || || ||||| Sbjct 16442 AAG-GACCAGAAGGTGTTTGAGCTGGCTGGTATGGTGTCGAAATTGGCTGCGTACCACCA 16384 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||| || || || ||||| ||||| ||| | || ||||| || || || | || Sbjct 16383 CGGTGATGCCTCTCTCCACCAGACCATCGTCGGGTTGGCGCAGAATTTCGTTGGGTCCAA 16324 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| | ||| | |||||||| || | || || | || || | || ||| || Sbjct 16323 CAACGTCAACATTCTCGAGCCTAGCGGTAACTTCGGTTCTCGTCTTTCTGGAGGCTCTGA 16264 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGA 32282 |||||| ||| |||||||||| ||||| ||||| | || | | ||| ||||| | Sbjct 16263 TGCTGCCAGCGCCCGTTACATTTTCACTCGTCTTTCGCCGTTTGCTCGCCGTGTTTTCAA 16204 Query 32283 CCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCG-GGTCGAGCCGG 32341 | || |||||| |||| ||| || |||| |||| || || |||| | ||||||| Sbjct 16203 CGCGATGGACGAACCGGTTCTCGAGAACAACATTGACGAAGG-AAGCGTCATTGAGCCGG 16145 Query 32342 TGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGG 32401 || ||| |||||| |||| ||| | | | || ||||| || ||||| || || | Sbjct 16144 TGAACTATGCGCCGGTGGTTCCCATGGTTCTCATCAATGGTGCCGACGGCATTGGTACCG 16085 Query 32402 G 32402 | Sbjct 16084 G 16084 >seq1 Length=398088 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT----GAATCGTGGGTCGTCGTTTGGTCAGCG 64718 || ||||| || |||||| | || ||||| || | | ||| | |||| ||||| Sbjct 36594 AAGAAGGCCGACTGGGCCCTTCGCTGGATCTCCGACAAG-GAGTCTACCTTTGCGCAGCG 36652 Query 64719 TCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTT 64778 ||| | || || || || || || || ||||| || | |||| || || || Sbjct 36653 TCTGGTCGCATTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCTTTCTCGTCCATCTT 36712 Query 64779 CTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCG 64838 |||||| || ||||| ||||||||||| || ||| | || || |||||||||||||| || Sbjct 36713 CTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCG 36772 Query 64839 GGACGAGGGGCTCCAC 64854 |||||||| || ||| Sbjct 36773 TGACGAGGGCCTGCAC 36788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303955492480