Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq226 93.3 3e-14 seq34 91.5 1e-13 seq896 82.4 6e-11 >seq226 Length=19278 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29834 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCC 29893 || ||||||||||| | |||| | | | ||||| ||| | || |||| || Sbjct 16518 AGGGTGGGAAAGGGGCGGGGCGCGCGCGTCAGCTGGACGCGCAGGGCGTCGACGTGGTCG 16577 Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29953 ||||||||| ||||| || ||| |||| | | || || | || ||| |||| Sbjct 16578 GCGTAGACGTGGGCGTCGCCGAGGACGTGGGTCAGCGAGCCGGGGACGAGGCCGCAGACG 16637 Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 | || | ||||| ||||| || | ||||||||| ||||| ||||| || ||||| ||| Sbjct 16638 CGGGCGAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCCC 16697 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||| | || | |||||||||||| || Sbjct 16698 ATGTCGCAGGAGCGCTGGTAGAGCTGGCA 16726 >seq34 Length=160120 Score = 91.5 bits (100), Expect = 1e-13 Identities = 184/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 49067 CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGGGTCGCACCCAAA 49126 |||||||||||||||||| || | |||||| | |||| |||| | || || Sbjct 15480 CTCGAGCACGAGCTGGGCGATGCGGTCGCCGGGCGCGACGGCAAAGTCGGCGTCGCCGTG 15539 Query 49127 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49186 ||| ||||| | ||||| || || ||| | |||||||| ||| | || ||||| ||| Sbjct 15540 GTTGAACAGCAGGACGCGGACGTGGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCGGT 15599 Query 49187 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 49246 || || | || | ||| |||||||| | || || || | |||||| ||| | Sbjct 15600 GTTGATGGCGTGCTTGACGGCGAGGCCGGAGCGCGGCGCGACGCGGCCGTACGTGCCGGC 15659 Query 49247 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGTCGAAGGAGGGGACCACGAC 49306 ||||| || ||||||||| || | || ||||| | | || | ||||| | | Sbjct 15660 GGGCACGGCCATGGCCAGGTCGGTGTCGACGAGGGCGCGGCCGCGCGCGGGGATCGTGGT 15719 Query 49307 CGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGC 49339 || | | ||||| ||||||||| || || || Sbjct 15720 CGCGCGCGCGGCGTACAGGTCGTAGCCGGCCGC 15752 >seq896 Length=67886 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 52730 CGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGTT 52789 |||||||||| || || || | ||| | ||| |||| |||||||||||||||||| Sbjct 56487 CGTCAAGGTGCGGGTGCGGACGACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCGCG 56428 Query 52790 -CACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52846 ||||| || ||||| ||| || | | ||| | | | |||||||||||| ||| Sbjct 56427 GCACGGA-CAGAAGGGTACGATTGGTGTGACGTACCGGTC--GGAGGACATGCCGTTCAC 56371 Query 52847 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 52906 | ||| || | ||| ||| ||||||||||||| |||||| | || || | ||||| Sbjct 56370 GACGGAGGGCATCACGCCGGACATCATCATCAACCCGCACGCCATCCCGTCGCGCATGAC 56311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406305923475168