Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq226 93.3 3e-14
seq34 91.5 1e-13
seq896 82.4 6e-11
>seq226
Length=19278
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 29834 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCC 29893
|| ||||||||||| | |||| | | | ||||| ||| | || |||| ||
Sbjct 16518 AGGGTGGGAAAGGGGCGGGGCGCGCGCGTCAGCTGGACGCGCAGGGCGTCGACGTGGTCG 16577
Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29953
||||||||| ||||| || ||| |||| | | || || | || ||| ||||
Sbjct 16578 GCGTAGACGTGGGCGTCGCCGAGGACGTGGGTCAGCGAGCCGGGGACGAGGCCGCAGACG 16637
Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013
| || | ||||| ||||| || | ||||||||| ||||| ||||| || ||||| |||
Sbjct 16638 CGGGCGAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCCC 16697
Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACA 30042
||||| | || | |||||||||||| ||
Sbjct 16698 ATGTCGCAGGAGCGCTGGTAGAGCTGGCA 16726
>seq34
Length=160120
Score = 91.5 bits (100), Expect = 1e-13
Identities = 184/273 (67%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 49067 CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGGGTCGCACCCAAA 49126
|||||||||||||||||| || | |||||| | |||| |||| | || ||
Sbjct 15480 CTCGAGCACGAGCTGGGCGATGCGGTCGCCGGGCGCGACGGCAAAGTCGGCGTCGCCGTG 15539
Query 49127 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49186
||| ||||| | ||||| || || ||| | |||||||| ||| | || ||||| |||
Sbjct 15540 GTTGAACAGCAGGACGCGGACGTGGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCGGT 15599
Query 49187 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 49246
|| || | || | ||| |||||||| | || || || | |||||| ||| |
Sbjct 15600 GTTGATGGCGTGCTTGACGGCGAGGCCGGAGCGCGGCGCGACGCGGCCGTACGTGCCGGC 15659
Query 49247 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGTCGAAGGAGGGGACCACGAC 49306
||||| || ||||||||| || | || ||||| | | || | ||||| | |
Sbjct 15660 GGGCACGGCCATGGCCAGGTCGGTGTCGACGAGGGCGCGGCCGCGCGCGGGGATCGTGGT 15719
Query 49307 CGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGC 49339
|| | | ||||| ||||||||| || || ||
Sbjct 15720 CGCGCGCGCGGCGTACAGGTCGTAGCCGGCCGC 15752
>seq896
Length=67886
Score = 82.4 bits (90), Expect = 6e-11
Identities = 129/180 (72%), Gaps = 6/180 (3%)
Strand=Plus/Minus
Query 52730 CGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGTT 52789
|||||||||| || || || | ||| | ||| |||| ||||||||||||||||||
Sbjct 56487 CGTCAAGGTGCGGGTGCGGACGACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCGCG 56428
Query 52790 -CACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52846
||||| || ||||| ||| || | | ||| | | | |||||||||||| |||
Sbjct 56427 GCACGGA-CAGAAGGGTACGATTGGTGTGACGTACCGGTC--GGAGGACATGCCGTTCAC 56371
Query 52847 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 52906
| ||| || | ||| ||| ||||||||||||| |||||| | || || | |||||
Sbjct 56370 GACGGAGGGCATCACGCCGGACATCATCATCAACCCGCACGCCATCCCGTCGCGCATGAC 56311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406305923475168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |