Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq233 120 2e-22
seq204 109 3e-19
seq23 89.7 3e-13
>seq233
Length=18884
Score = 120 bits (132), Expect = 2e-22
Identities = 160/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| ||||| || || ||||||||||| || ||||| || || || || || |||
Sbjct 1358 AGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGC 1417
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || || ||||| || | ||||| ||||||||||| | ||||||
Sbjct 1418 CCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCC 1477
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| ||||| ||||||||| || | ||
Sbjct 1478 TTGTCCTGGATC-TTCGACTTGACGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGT 1536
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| || || || | || || || || |||||||||
Sbjct 1537 AATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1576
Score = 114 bits (126), Expect = 8e-21
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || ||||||||||| |||||||| || || || || || |||
Sbjct 1586 AGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGC 1645
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||||||||| | ||||||
Sbjct 1646 CCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCC 1705
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | || ||||| ||||||||| || | ||
Sbjct 1706 TTGTCCTGGATC-TTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGT 1764
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| || || || | || || ||||| |||||||||
Sbjct 1765 AATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATG 1804
Score = 82.4 bits (90), Expect = 5e-11
Identities = 151/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || || |||||| |||||||| || || || || ||
Sbjct 1814 AGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGA 1873
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || || ||||| || | ||||| ||||||||||| | ||||||
Sbjct 1874 CCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1933
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || ||| || | || ||| | || ||||| |||||| |||| |||
Sbjct 1934 TTATC-CTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGT 1992
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || ||||| | ||| || || || || |||||
Sbjct 1993 GATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
>seq204
Length=21219
Score = 109 bits (120), Expect = 3e-19
Identities = 166/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
||||||| | || |||| ||||| || || ||||||||||| || ||||| || || |
Sbjct 5913 CGCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGG 5854
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| || || || |||| || || || || ||||| || || | ||||| ||||| ||||
Sbjct 5853 AGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCG 5794
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | ||||||||||| |||| || | || || | || ||||| |||||||
Sbjct 5793 GGATGCCCTCCTTGTCCTGGATC-TTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCC 5735
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || | ||| || || || || || | || || || || |||||||| |||
Sbjct 5734 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 5681
>seq23
Length=165582
Score = 89.7 bits (98), Expect = 3e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || ||||| |||||| || ||||| || || || || || ||
Sbjct 62212 AGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGG 62153
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || || ||||| || | ||||| ||||||||||| | ||||||
Sbjct 62152 CCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 62093
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 62092 TTGTCCTGGATCTT 62079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314726132466632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |