Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq204 163 7e-35
seq23 159 8e-34
seq233 158 3e-33
>seq204
Length=21219
Score = 163 bits (180), Expect = 7e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || ||| ||| || |||||||| || || | ||||| | || ||
Sbjct 5896 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 5837
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| ||||| || ||||| || || | || |||||||||
Sbjct 5836 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 5777
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||| ||||| ||||| || ||||| || ||||| |||
Sbjct 5776 TGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTC 5717
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 5716 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682
>seq23
Length=165582
Score = 159 bits (176), Expect = 8e-34
Identities = 157/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| ||||| ||||| || |||||||| || || | ||||||| || ||
Sbjct 62206 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCC 62147
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| ||||| || ||||| || || | || |||||||||
Sbjct 62146 TCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 62087
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||| ||||| ||| || ||||| | |||||| |||
Sbjct 62086 TGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTC 62027
Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| || ||||| || ||
Sbjct 62026 TTGCCCGTCAGGGTCTTCACGAA 62004
>seq233
Length=18884
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || ||| ||| || || ||||| || || | || |||| |||||
Sbjct 1592 AGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCC 1651
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| ||||| || || || || ||||| || || | || |||||||||
Sbjct 1652 TCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 1711
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||| ||||| ||| || |||||||| || ||||||
Sbjct 1712 TGGATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTC 1771
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| ||||| | ||||||
Sbjct 1772 TTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || ||| ||| || |||||||| || |||| || |||| || ||
Sbjct 1364 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCGTCC 1423
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || || || ||||| || || | || |||||||||
Sbjct 1424 TCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCC 1483
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || || ||||| ||| || |||||||| || ||||||
Sbjct 1484 TGGATCTTCGACTTGACGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTC 1543
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| || || | ||||||
Sbjct 1544 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || ||||| || |||||||| || || || || | |||||
Sbjct 2048 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCC 2107
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| ||||| || ||||| || || | || |||||||||
Sbjct 2108 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 2167
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||| ||||| || || ||||| || |||||||||
Sbjct 2168 TGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTC 2227
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | |||||
Sbjct 2228 TTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || ||||| || || ||||| || || ||||| | || ||
Sbjct 1820 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCC 1879
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| ||||| || ||||| || || | || ||||| |||
Sbjct 1880 TCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCC 1939
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||| ||||| || || ||||| || |||||||||
Sbjct 1940 TGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTC 1999
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | |||||
Sbjct 2000 TTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159138574121960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |