Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq233 116 3e-21
seq204 100 2e-16
>seq233
Length=18884
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || ||||||||||| || || || || || |||| || || || | || ||
Sbjct 1594 CACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATCCTC 1653
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| |||||||| || || || ||||||||||| | || | || ||| ||||||
Sbjct 1654 CAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1713
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| ||| |||| ||| | | | ||| ||||| |||||| || | ||| || | |
Sbjct 1714 GATCTTCGACTTGA-CGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCT 1772
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| |||||||| || || |||||||| |||||
Sbjct 1773 TGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803
Score = 113 bits (124), Expect = 4e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || ||||||||||| || || || || || || | || || || |||| ||
Sbjct 1366 CACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCGTCCTC 1425
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||||||||| || || ||||||||||| | || | | ||| ||||||
Sbjct 1426 CAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 1485
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| ||| |||| ||| | | | ||| ||||| |||||| || | ||| || | |
Sbjct 1486 GATCTTCGACTTGA-CGTTGTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCT 1544
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| |||||||| || || || ||||| |||||
Sbjct 1545 TGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || ||||| ||| || || || || || ||| || || || |
Sbjct 2044 GCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 2103
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||||||||| || || ||||||||||| | || | || ||| ||
Sbjct 2104 ATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 2163
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| || ||| |||| ||| | | | ||| || ||||||||| |||| ||||
Sbjct 2164 GTCCTGAATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGA 2222
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || || || ||||| || || |||||||||||
Sbjct 2223 TCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || ||||| ||| || || || || || ||| || || || |||| ||
Sbjct 1822 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCCTC 1881
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||||||||| || || ||||||||||| | || | || ||| || |||
Sbjct 1882 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTG 1941
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| |||| ||| | | | ||| || ||||||||| |||| ||||| | |
Sbjct 1942 AATCTTCGACTTGA-CGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTCT 2000
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || ||||| || || |||||||||||
Sbjct 2001 TGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
>seq204
Length=21219
Score = 100 bits (110), Expect = 2e-16
Identities = 156/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || ||||||||||| || || || || || |||| || || || |
Sbjct 5900 GCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 5841
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| ||||| || || || || ||||||||||||| || | || ||| ||
Sbjct 5840 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 5781
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGT 39245
|||| ||| || |||| | | | ||| || ||| |||||| || | ||
Sbjct 5780 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGCT---CTCCACCTCAAGGGT 5724
Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
||| | || ||||| || || || || ||||| ||||||||
Sbjct 5723 GATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429540867481352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |