Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq226 116 3e-21 seq34 87.8 1e-12 >seq226 Length=19278 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29606 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCA 29665 || ||||||||||| | |||| | | | ||||| | | ||| | || |||||||| Sbjct 16518 AGGGTGGGAAAGGGGCGGGGCGCGCGCGTCAGCTGGACGCGCAGGGCGTCGACGTGGTCG 16577 Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29725 ||||||||| || || || ||| |||| | | || || | || ||| |||| Sbjct 16578 GCGTAGACGTGGGCGTCGCCGAGGACGTGGGTCAGCGAGCCGGGGACGAGGCCGCAGACG 16637 Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 | || | ||||| ||||| || | ||||||||| ||||| |||||||| ||||| ||| Sbjct 16638 CGGGCGAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCCC 16697 Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 ||||| | || | ||||||||||||||| Sbjct 16698 ATGTCGCAGGAGCGCTGGTAGAGCTGGCA 16726 >seq34 Length=160120 Score = 87.8 bits (96), Expect = 1e-12 Identities = 183/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 49872 CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCATCACACCCAAA 49931 |||||||||||||||||| || | |||||| | |||| |||| | | || Sbjct 15480 CTCGAGCACGAGCTGGGCGATGCGGTCGCCGGGCGCGACGGCAAAGTCGGCGTCGCCGTG 15539 Query 49932 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49991 ||| ||||| | ||||| || || ||| | |||||||| ||| | || ||||| ||| Sbjct 15540 GTTGAACAGCAGGACGCGGACGTGGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCGGT 15599 Query 49992 GTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 50051 || || | || | ||| |||||||| | || || || | |||||| ||| | Sbjct 15600 GTTGATGGCGTGCTTGACGGCGAGGCCGGAGCGCGGCGCGACGCGGCCGTACGTGCCGGC 15659 Query 50052 GGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCACGAC 50111 ||||| || ||| ||||| || | || ||||| | |||| | ||||| | | Sbjct 15660 GGGCACGGCCATGGCCAGGTCGGTGTCGACGAGGGCGCGGCCGCGCGCGGGGATCGTGGT 15719 Query 50112 GGGGTGAGCGGCCGCCAGGTCGTAACCGGCGGC 50144 | | | ||||| ||||||||| ||||| || Sbjct 15720 CGCGCGCGCGGCGTACAGGTCGTAGCCGGCCGC 15752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406158725096944