Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq204 118 2e-21 seq233 100 7e-16 seq23 100 7e-16 >seq204 Length=21219 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| |||| | || | || || || || || |||||||| Sbjct 5876 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 5817 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||||||||| | || ||| || ||||| || || || || |||||| | Sbjct 5816 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 5757 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | |||| || ||||| || ||||| || || || ||||||||||| ||||| || Sbjct 5756 GTCGATCGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 5697 Query 152093 GAAGACCTGCATTTTACC 152110 ||||| |||||| || || Sbjct 5696 GAAGATCTGCATCTTGCC 5679 >seq233 Length=18884 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||| || || |||||||| |||| | || | |||||| Sbjct 1591 GAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGCCCATC 1650 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || |||| ||||||||||| || ||| || ||||| || Sbjct 1651 CTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 1710 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | |||| ||||| || || || ||||| || Sbjct 1711 CTGGATCTTCGACTTGACGTTGTCGATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGT 1770 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| || |||| |||||| Sbjct 1771 CTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || ||||||||||| ||| | || | ||||| Sbjct 2047 GAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATC 2106 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||||| || ||| || ||||| || Sbjct 2107 CTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 2166 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| | || | |||| || ||| || || || || || || Sbjct 2167 CTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGT 2226 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| ||||| Sbjct 2227 CTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| || | | || | ||| || || || || || || || Sbjct 1384 CTCCTTCTGGATGTTGTAGTCCGACAGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAA 1443 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| |||| ||||||||||| || ||| || ||||| || || || || ||||| | Sbjct 1444 GATCAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 1503 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | |||| ||||| || || || ||||| || |||||||| || ||||| || Sbjct 1504 GTCAATCGTGTCGCTGCTCTCCACCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGAC 1563 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 1564 GAAGATCTGCAT 1575 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || || |||||||| ||| | || | || || Sbjct 1819 GAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTC 1878 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||||| || ||| || ||||| || Sbjct 1879 CTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATC 1938 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| | || | |||| || ||| || || || || || || Sbjct 1939 CTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGGGTGATCGT 1998 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| ||||| Sbjct 1999 CTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031 >seq23 Length=165582 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| ||||| || ||||||||||| |||| | || | || || Sbjct 62206 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCC 62147 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||||| || ||| || ||||| || Sbjct 62146 TCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 62087 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | |||| || ||| || || | ||| || || Sbjct 62086 TGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTC 62027 Query 152073 TTGCCCGTGAGAGTCTTCACGAA 152095 |||||||| || ||||||||||| Sbjct 62026 TTGCCCGTCAGGGTCTTCACGAA 62004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153807435870584