Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06- 27] 904 sequences; 21,299,258 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq204 179 8e-40 seq233 170 4e-37 seq23 152 1e-31 seq197 84.2 5e-11 >seq204 Length=21219 Score = 179 bits (198), Expect = 8e-40 Identities = 180/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || ||||| || | |||||| || || |||||||||||||| | Sbjct 5911 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 5852 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 5851 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 5792 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||||| |||| || || Sbjct 5791 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCG-AGCTCTCCAC 5733 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| ||||| | ||||| ||||| |||||||| || Sbjct 5732 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682 >seq233 Length=18884 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | |||||| || || |||||||||||||| | Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| || || || || |||||||||| || || ||||| ||| Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || ||||||||||| |||||||| | || ||| | || || |||| || ||| || || Sbjct 1469 ATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTGT-CGCTGCTCTCCAC 1527 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || |||||||| ||||||| ||||| ||||| |||||||| Sbjct 1528 CTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1575 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||||||| || ||||| || | ||| || || |||||||||||||| Sbjct 2032 ACCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 2091 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || || |||||||||| || || ||||| ||| Sbjct 2092 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGG 2151 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || ||| | ||||| |||||||| | || || Sbjct 2152 GATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCAC 2211 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || || | ||||| ||||| || ||||| Sbjct 2212 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2259 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | |||||| || || || ||||||||||| | Sbjct 1577 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1636 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || |||||||| || || || || || || |||| || || ||||| ||| Sbjct 1637 AGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGGG 1696 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| |||| || ||| || || Sbjct 1697 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGT-CGCTGCTCTCCAC 1755 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || |||||||| ||||||| ||||| || || |||||||| Sbjct 1756 CTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1803 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| || || || ||||||||||| Sbjct 1805 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1864 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || |||||||| | || || ||||| ||| Sbjct 1865 AGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGG 1924 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| | || ||| | ||||| |||||||| | || || Sbjct 1925 ATGCCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCACC 1984 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || || | ||||| ||||| || ||||| Sbjct 1985 TCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031 >seq23 Length=165582 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || ||||| || | || || || |||||||||||||| | Sbjct 62222 ACCACCGCGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 62163 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || |||||||||| || || ||||| ||| Sbjct 62162 CAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGG 62103 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| |||||||| | ||||| Sbjct 62102 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGAC 62043 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || | |||||| ||||| ||||||| ||||| ||||| Sbjct 62042 CTCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 62004 >seq197 Length=21987 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 317056 ATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTT 317115 || || | |||||| ||||||||||| | ||| ||||| ||||| || || || || | Sbjct 7136 ATGGCGCGCATCAGCGTCGACTTGCCCGAACCGTTGGGACCGCACAGGCCGTAGCGCTGG 7195 Query 317116 CCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAG 317175 || ||||||| | |||| | |||||| || ||||| |||| || || || ||| Sbjct 7196 CCGCGCTTCAGACGCAGGTGGGTCTGGTTCAGCAGGATCTTGGCACCGTACGCGAGCGAG 7255 Query 317176 AACTCACAATCACACAGGTCCTCGCC 317201 ||| || | |||||||||||||| Sbjct 7256 AACGTGCAGTTGCACAGGTCCTCGCC 7281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046727076143216