Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystiopsis_20minuta_20[genbank_20GCA_5F001676865.1_202016-06-
27] 904 sequences; 21,299,258 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq233 192 5e-44
seq204 185 8e-42
seq23 150 2e-31
seq34 107 2e-18
>seq233
Length=18884
Score = 192 bits (212), Expect = 5e-44
Identities = 182/230 (79%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1576 GCCACCGCGCAGACGGAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGA 1635
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || ||| | || || ||||||||||| ||||| ||||| ||||| ||||||| ||
Sbjct 1636 CAGCGTCCGCCCATCCTCCAGCTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGCGG 1695
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| ||| | | | |||||||| |||||
Sbjct 1696 GATGCCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCGATCGTGTCGCTGCTCTCCA 1754
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | ||| ||||| || |||||||| ||||| || || |||||||||
Sbjct 1755 CCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATG 1804
Score = 176 bits (194), Expect = 4e-39
Identities = 180/230 (78%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 1349 CCACCCCGCAGCCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 1408
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754
|| || ||| |||| || ||||||||||| || || ||||| ||||| |||||| |||||
Sbjct 1409 AGCGTCCGCCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCCGGCGGG 1468
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | | |||||||||| ||| || ||| ||| | | | |||||||| |||||
Sbjct 1469 ATC-CCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCAATCGTGTCGCTGCTCTCCA 1526
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | ||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct 1527 CCTCGAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1576
Score = 163 bits (180), Expect = 3e-35
Identities = 175/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||||| |||||||| ||||||||||||||| ||||||
Sbjct 1804 GCCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 1863
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|||||||| |||| || ||||||||||| || || || |||||||| ||||||| ||
Sbjct 1864 CAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGG 1923
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||| ||| ||| | || | | ||| | | | ||||| ||||||||
Sbjct 1924 GATGCCCTCCTTATCC-TGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCA 1982
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || ||||| || || || |||||||| ||||| || |||||
Sbjct 1983 CCTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 2031
Score = 158 bits (174), Expect = 1e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|||||||| || || | |||||| |||||||| ||||||||| ||||| ||||||
Sbjct 2033 CCGCCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 2092
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || ||||||||||| || || ||||||||||| ||||||| ||
Sbjct 2093 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 2152
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | || | | ||| | | | ||||| |||||||||
Sbjct 2153 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCGATCGTGTCCGACGACTCCAC 2211
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || ||||| || || || |||||||| ||||| || ||||||
Sbjct 2212 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCATG 2260
>seq204
Length=21219
Score = 185 bits (204), Expect = 8e-42
Identities = 185/237 (78%), Gaps = 10/237 (4%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
||||||| || || || | |||||| |||||||||||||||||||| ||||| |||||||
Sbjct 5913 CGCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGG 5854
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
|||||||||| |||| |||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 5853 AGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCG 5794
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTC---GCTCGA 41808
| | || |||||||||| ||| || ||| || | || | ||||| |||
Sbjct 5793 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATCGTGTCCGAGCT--- 5739
Query 41809 CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||||||| | || || || || ||||| || ||||| ||||| |||||||| ||
Sbjct 5738 CTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 5682
>seq23
Length=165582
Score = 150 bits (166), Expect = 2e-31
Identities = 167/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | |||||| ||||| || ||||||||| ||||| ||||||||
Sbjct 62221 CCACCGCGCAGACGCAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 62162
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || ||||||||||| || || ||||||||||| ||||||| ||
Sbjct 62161 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 62102
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | ||||| ||||| |
Sbjct 62101 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATCGTGTCCGAGGACTCGA 62044
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854
|||||| || || || || |||||||| ||||| ||||||
Sbjct 62043 CCTCCAAAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 62003
>seq34
Length=160120
Score = 107 bits (118), Expect = 2e-18
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 85804 TCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCG 85863
|||| || || |||||||||||| |||||||| ||| || |||||||| |||||||
Sbjct 15640 TCGCGCCGCGCTCCGGCCTCGCCGTCAAGCACGCCATCAACACCGGCGCCGGCGTCATCG 15581
Query 85864 ACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||||| ||||| | || | || ||||||||||||||
Sbjct 15580 ACGCCGACTACCGCGGCCACGTCCGCGTCCTGCTGTTCAACCACGGCGA 15532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462298775964800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |