Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq46 174 3e-38
seq116 95.1 3e-14
>seq46
Length=146035
Score = 174 bits (192), Expect = 3e-38
Identities = 323/466 (69%), Gaps = 10/466 (2%)
Strand=Plus/Minus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
||||| |||| ||||| || | | | || || ||||| | || ||||| ||
Sbjct 141957 TTTGCTCAGCGCCTCGTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGTGCCTTT 141898
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
| ||||||| ||| |||| || ||| | ||||||||||| | | || || |||
Sbjct 141897 GCCTCCATCTTCTGGTTGCGCAAGCGTGGTCTCATGCCTGGCCTGACTTTTTCCAATGAG 141838
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351
| || ||| ||||||||||| || || | | || | | || |||| || | ||
Sbjct 141837 CTGATTTCTCGTGACGAGGGTCTTCA-CACCGACTTTGCCTGCCTCTTGTACTCTCACCT 141779
Query 230352 CCAGAACAAGCTACCATTCGAG--ACGG-TCAAACAAATCATTACAGAAGCAGTTGAAAA 230408
| ||||| | || | || || | || | ||||||| || || || || | |
Sbjct 141778 C---AACAACCGCCCTAGCAAGCAACTGATCCAGGAAATCATCACCGATGCTGTCGCTAT 141722
Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468
|| ||||||||| || || || | || ||| |||| | || ||||||||||| ||
Sbjct 141721 TGAGAAGGAGTTCCTTACCGAGGCCCTGCCCTGTGCCCTTCTCGGTATGAACGCTGACCT 141662
Query 230469 TATGG-GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527
||| ||| ||||||||| ||||| |||||||| || | ||||| |||||| ||||||
Sbjct 141661 CATGAAGAC-GTACATCGAGTTCGTTGCCGACCGTCTTCTCGTTGCCCTTGGTAACGAGA 141603
Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587
| || ||||| || |||||||| | || |||||| |||||||||| || ||||
Sbjct 141602 AGGTCTACAAGGCTTCCAACCCCTTCGACTTCATGGAGAACATTTCGCTTGGTGGCAAGA 141543
Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633
||||||||||||| ||||| || |||| || |||| | | |||||
Sbjct 141542 CCAACTTCTTCGAGAAGCGCGTTGGTGATTACCAGAAGGCGGGTGT 141497
>seq116
Length=85249
Score = 95.1 bits (104), Expect = 3e-14
Identities = 213/318 (67%), Gaps = 9/318 (3%)
Strand=Plus/Plus
Query 305305 CGAAGGTTCTCCCGCGAGCAAAGGTATCCTCCAGTATCACATGTGGGATGTTACCCCCAA 305364
||| || ||||||| | | ||||||||||||| | | |||||||| || |||||||
Sbjct 69521 CGAGGGCTCTCCCGTCTCCCAGGGTATCCTCCAGTTTGATATGTGGGACGTCACCCCCA- 69579
Query 305365 AAGTAACCTC---GACTGGCGAGGTCTCGAAGAACGCGTCAAGAAA---GGTGTGAGGAA 305418
|| |||| |||||| ||| | || | ||||||| ||||| | ||
Sbjct 69580 --GTGACCTTTGGGACTGGACTTCTCTTAAGGAGCAGATCAAGAAGAACGGTGTTCGCAA 69637
Query 305419 TTCTCTACTGACTGCTCTCATGCCAACCGCTAGCACTGCGCAAATTTGCGGGAGCGTAGA 305478
||||| || ||||| |||||| ||||| || ||| |||| ||| || | | ||
Sbjct 69638 CTCTCTTCTCCTTGCTCCCATGCCGACCGCCAGTACTTCGCAGATTCTGGGCAACAACGA 69697
Query 305479 AGCATTTGAACCAATCACCTCGAACCTATATTCCCGCCGCACACTGGCCGGTGAGTTCCC 305538
|| |||||| |||||| ||| | || ||||| ||||| ||||||||||
Sbjct 69698 GTGCTTCGAACCATACACCTCCAACATCTACCAGCGCCGTGTCCTGGCTGGTGAGTTCCA 69757
Query 305539 AGTGGTCAACTCTTATCTCGTCAGAGAACTGATTGAACGTGGAACATGGAGTGAAAACAT 305598
|| || ||| | | | || | || ||| | || | ||| ||| ||| |||||
Sbjct 69758 GGTTGTTAACCCGTGGTTGCTCCGCGATCTGGTCGACCTTGGCCTGTGGTCTGATAACAT 69817
Query 305599 GAAGAACCAAATCATTGC 305616
|||||||| ||||||||
Sbjct 69818 GAAGAACCGTATCATTGC 69835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057815271629720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |