Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq46 174 3e-38 seq116 95.1 3e-14 >seq46 Length=146035 Score = 174 bits (192), Expect = 3e-38 Identities = 323/466 (69%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| |||| ||||| || | | | || || ||||| | || ||||| || Sbjct 141957 TTTGCTCAGCGCCTCGTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGTGCCTTT 141898 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | ||||||| ||| |||| || ||| | ||||||||||| | | || || ||| Sbjct 141897 GCCTCCATCTTCTGGTTGCGCAAGCGTGGTCTCATGCCTGGCCTGACTTTTTCCAATGAG 141838 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 | || ||| ||||||||||| || || | | || | | || |||| || | || Sbjct 141837 CTGATTTCTCGTGACGAGGGTCTTCA-CACCGACTTTGCCTGCCTCTTGTACTCTCACCT 141779 Query 230352 CCAGAACAAGCTACCATTCGAG--ACGG-TCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 | ||||| | || | || || | || | ||||||| || || || || | | Sbjct 141778 C---AACAACCGCCCTAGCAAGCAACTGATCCAGGAAATCATCACCGATGCTGTCGCTAT 141722 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 || ||||||||| || || || | || ||| |||| | || ||||||||||| || Sbjct 141721 TGAGAAGGAGTTCCTTACCGAGGCCCTGCCCTGTGCCCTTCTCGGTATGAACGCTGACCT 141662 Query 230469 TATGG-GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527 ||| ||| ||||||||| ||||| |||||||| || | ||||| |||||| |||||| Sbjct 141661 CATGAAGAC-GTACATCGAGTTCGTTGCCGACCGTCTTCTCGTTGCCCTTGGTAACGAGA 141603 Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | || ||||| || |||||||| | || |||||| |||||||||| || |||| Sbjct 141602 AGGTCTACAAGGCTTCCAACCCCTTCGACTTCATGGAGAACATTTCGCTTGGTGGCAAGA 141543 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 ||||||||||||| ||||| || |||| || |||| | | ||||| Sbjct 141542 CCAACTTCTTCGAGAAGCGCGTTGGTGATTACCAGAAGGCGGGTGT 141497 >seq116 Length=85249 Score = 95.1 bits (104), Expect = 3e-14 Identities = 213/318 (67%), Gaps = 9/318 (3%) Strand=Plus/Plus Query 305305 CGAAGGTTCTCCCGCGAGCAAAGGTATCCTCCAGTATCACATGTGGGATGTTACCCCCAA 305364 ||| || ||||||| | | ||||||||||||| | | |||||||| || ||||||| Sbjct 69521 CGAGGGCTCTCCCGTCTCCCAGGGTATCCTCCAGTTTGATATGTGGGACGTCACCCCCA- 69579 Query 305365 AAGTAACCTC---GACTGGCGAGGTCTCGAAGAACGCGTCAAGAAA---GGTGTGAGGAA 305418 || |||| |||||| ||| | || | ||||||| ||||| | || Sbjct 69580 --GTGACCTTTGGGACTGGACTTCTCTTAAGGAGCAGATCAAGAAGAACGGTGTTCGCAA 69637 Query 305419 TTCTCTACTGACTGCTCTCATGCCAACCGCTAGCACTGCGCAAATTTGCGGGAGCGTAGA 305478 ||||| || ||||| |||||| ||||| || ||| |||| ||| || | | || Sbjct 69638 CTCTCTTCTCCTTGCTCCCATGCCGACCGCCAGTACTTCGCAGATTCTGGGCAACAACGA 69697 Query 305479 AGCATTTGAACCAATCACCTCGAACCTATATTCCCGCCGCACACTGGCCGGTGAGTTCCC 305538 || |||||| |||||| ||| | || ||||| ||||| |||||||||| Sbjct 69698 GTGCTTCGAACCATACACCTCCAACATCTACCAGCGCCGTGTCCTGGCTGGTGAGTTCCA 69757 Query 305539 AGTGGTCAACTCTTATCTCGTCAGAGAACTGATTGAACGTGGAACATGGAGTGAAAACAT 305598 || || ||| | | | || | || ||| | || | ||| ||| ||| ||||| Sbjct 69758 GGTTGTTAACCCGTGGTTGCTCCGCGATCTGGTCGACCTTGGCCTGTGGTCTGATAACAT 69817 Query 305599 GAAGAACCAAATCATTGC 305616 |||||||| |||||||| Sbjct 69818 GAAGAACCGTATCATTGC 69835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057815271629720