Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq46 123 3e-23
seq116 118 1e-21
>seq46
Length=146035
Score = 123 bits (136), Expect = 3e-23
Identities = 378/580 (65%), Gaps = 7/580 (1%)
Strand=Plus/Plus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| || || ||| ||| ||||||||||| | | ||| | || |||||||| || ||
Sbjct 141797 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGG 141856
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|| ||||| || |||||||| | ||| || ||||| ||||| | || || |||||
Sbjct 141857 CCAGGCATGAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAG 141916
Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGT 24311
|| || || || |||||||| |||| || | | || | || | ||||
Sbjct 141917 ATACCCTCGACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCA 141976
Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371
|||||||| | |||||||||||||| | || || || || || || || |||
Sbjct 141977 ATCCACTTCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTA 142036
Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431
|||||||| | | || || | || |||||||||| || || |
Sbjct 142037 AAGAGATAAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTC 142096
Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491
|| || |||||||| || || || || || |||||||| || | |||||||| || |
Sbjct 142097 TCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACC 142156
Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551
|| || || |||| || || | | || || ||||| || || ||| || |||
Sbjct 142157 TGAACCTCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCA 142216
Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 24608
|| || || | | || ||||| | | || | || || | | || |||||
Sbjct 142217 AAGAAAGCGAGAATGTGAGAGATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAG 142276
Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668
|| | | ||| ||||| | ||| | || || | ||||| || || ||||| |||||
Sbjct 142277 TCGTGAAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTC 142336
Query 24669 TTATACATATTCCAGATGTCATGATA-TTGAATTGGAAAA 24707
|| ||||| | ||| || ||||| || |||| ||||||
Sbjct 142337 TTGTACATCTGCCAAATCTCATGGTACTTGATGGGGAAAA 142376
>seq116
Length=85249
Score = 118 bits (130), Expect = 1e-21
Identities = 391/603 (65%), Gaps = 24/603 (4%)
Strand=Plus/Minus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || || | || ||||||| | ||| || || | | || | || |||||
Sbjct 68923 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCTTCATG 68864
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
|| |||||||| ||||| ||||| | || ||||| | || | | ||||| || ||
Sbjct 68863 AACAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTGCCG 68804
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
|||||| |||||||||||| | | | || | |||||| || || | || ||
Sbjct 68803 TGATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGATAAATA 68744
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | | || || || ||||| || ||||| || | || | || ||||| || |
Sbjct 68743 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAG 68684
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| |||| ||||| || || | ||| ||||| || | ||| || ||
Sbjct 68683 ACACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAGAGCCG 68624
Query 54281 CTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
| ||||| ||| || ||| || || || || || ||||| || || || | |
Sbjct 68623 GTAGCACGGATACGGTGAACGTTG--AGGCCAATACCACCCGCCATCTTGGAAATCATAG 68566
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
| || || || ||||||||||| ||||| || || |||||| |||||| || || |
Sbjct 68565 CACAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGA 68506
Query 54399 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454
| || ||| | || || || ||| || ||||| || | || || || ||
Sbjct 68505 AGCACGAAGAGAGCTG----CGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGGATGCA 68450
Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATA----GCT-GAGTCTAT-A 54508
|| || || | || ||| | || ||||| ||||| | | ||| || | | |
Sbjct 68449 TGAGTGAAGAACTTGCTAGACATGAGGTTGTAAGTCTCCAGAACACGCTCGACATTGTCA 68390
Query 54509 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 54568
|||| || || || || |||||||| | ||||||||| || | ||||| |||
Sbjct 68389 CCCCA------AACGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCAACAATC 68336
Query 54569 TTG 54571
|||
Sbjct 68335 TTG 68333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593716820541120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |