Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq46 266 3e-66 seq3 116 4e-21 seq13 111 2e-19 seq157 105 7e-18 >seq46 Length=146035 Score = 266 bits (294), Expect = 3e-66 Identities = 543/801 (68%), Gaps = 23/801 (3%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||||| |||||||| ||| |||||| |||||||||| | |||| || Sbjct 142413 GAGCCTCTGCTGCAGGAGAACCCTAACCGCTTCGTGCTTTTCCCCATCAAGTACCATGAG 142354 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| ||||||||||| | |||||| | || ||| Sbjct 142353 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCGTTCTGGACTGCTGAGGAGATTGATCTG 142294 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| ||||||| | ||| ||||| | | |||| || ||| Sbjct 142293 TCTAAGGATCTTCACGACTGGAACAACCGCATGAACAAGGATGAGCAGTTCTTTATCTCT 142234 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 ||| | || || || || || || || ||||| || |||||||| || || ||||| Sbjct 142233 CACATTCTCGCTTTCTTTGCTGCTTCTGATGGCATTGTGAACGAGAACCTTGTTGAGCGC 142174 Query 116812 --TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCC 116869 || |||| ||||| ||||| ||||||| || ||||||||||| || |||||| Sbjct 142173 TTTTCCGCT---GAGGTTCAGGTTCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATG 142117 Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCG 116929 ||||||||| | ||||| || | || || || || || || ||| | | Sbjct 142116 ATGGAGAACATTCACTCTGAGACCTACTCCCTGCTGATTGATACTTACAT------CAAG 142063 Query 116930 GAG---GAGAAGCTCCGTT---TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG 116983 ||| | ||| | || | || |||||||| || || || || ||| | Sbjct 142062 GAGCCCGCCCAGCGCACTTATCTCTTTAACGCCATTGACACCATTCCCTGCATTCGCCGC 142003 Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| ||| ||||| |||| || || || |||| | ||||||| Sbjct 142002 AAGGCCGATTGGGCCCTGAAGTGGATTGCCGACAAGGAATCCACCTTTGCTCAGCGCCTC 141943 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || || |||||||||||||| ||||||| || || || ||| |||| || ||| Sbjct 141942 GTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGTGCCTTTGCCTCCATCTTCTGG 141883 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 | || || || |||||||| ||||||||||| ||| ||||| || || | ||| Sbjct 141882 TTGCGCAAGCGTGGTCTCATGCCTGGCCTGACTTTTTCCAATGAGCTGATTTCTCGTGAC 141823 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 |||||||| || |||||||||||| | ||| | || | | || || ||| Sbjct 141822 GAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAACAACCGCCCTAGC 141763 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | | || ||| ||| ||||||| || ||||| || ||| || ||||| ||| Sbjct 141762 AAGCAACTGATCCAGGAAATCATCACCGATGCTGTCGCTATTGAGAAGGAGTTCCTTACC 141703 Query 117284 GAAGCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGA 117342 || || ||| || |||| || || || | || || ||| | |||||||| Sbjct 141702 GAGGCCCTGCCCTGTGC-CCTTCTCGGTATGAACGCTGACCTCATGAAGACGTACATCGA 141644 Query 117343 GTTCGTCGCCGACAGGCTGCT 117363 |||||| |||||| | || || Sbjct 141643 GTTCGTTGCCGACCGTCTTCT 141623 >seq3 Length=407529 Score = 116 bits (128), Expect = 4e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| | | |||| | Sbjct 21375 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 21434 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | || || |||||||| ||| |||||||||| || || Sbjct 21435 GACAACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 21493 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | ||||| ||| ||||||||||||||||| Sbjct 21494 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGACTACAACATCCAGAA 21553 Query 40878 GGAGGCCACGCTGCATCTAGT 40898 |||| |||| || || || || Sbjct 21554 GGAGTCCACTCTCCACCTGGT 21574 >seq13 Length=240985 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| || || || |||||| | | |||| ||||| Sbjct 37757 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACG-TCAAG 37815 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| ||||| |||||||| || |||||||||| || || || | || || Sbjct 37816 TCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGA 37875 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | ||||| || |||||||||||| ||||||||| |||| || Sbjct 37876 AAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACTCTC 37935 Query 40891 CATCTAGT 40898 || || || Sbjct 37936 CACCTGGT 37943 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || || ||| | || ||||| | | Sbjct 38191 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCTTGGAGGTCGAGTCTTCT 38250 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| |||||||| ||| |||| || Sbjct 38251 GATACCATTGACAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 38309 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| || || ||||| || || | || || ||| |||||||| Sbjct 38310 ACAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGACGTACTCTCTCTGACTACAA 38369 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| |||| || || Sbjct 38370 CATCCAGAAGGAGTCCACTTTGCACCTGGT 38399 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||| ||| | || || || | || Sbjct 37963 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCC 38022 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| |||||||| || |||||||| Sbjct 38023 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 38082 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | || ||||| ||| |||||| Sbjct 38083 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACAAC 38142 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| |||| || || || || Sbjct 38143 ATCCAGAAGGAATCCACTCTCCACCTTGT 38171 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||| || | || || || | | Sbjct 38419 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTTGAAGTTGAGTCTTCT 38478 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| |||||||| ||| |||||||| Sbjct 38479 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 38538 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || || | ||||| || |||||||||| Sbjct 38539 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAAC 38598 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || |||||||| |||| || || Sbjct 38599 ATTCAGAAGGAATCCACTCTCCA 38621 >seq157 Length=65766 Score = 105 bits (116), Expect = 7e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || || ||| |||| || || || Sbjct 44948 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 45007 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | ||||| || || | || || |||||||| ||| |||| Sbjct 45008 TCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGAT 45067 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 45068 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTAC 45127 Query 40867 AACATCCAGAAGG 40879 ||||| ||||||| Sbjct 45128 AACATTCAGAAGG 45140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215052485440