Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13 122 8e-23 seq157 114 1e-20 seq3 114 1e-20 >seq13 Length=240985 Score = 122 bits (134), Expect = 8e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || ||||||||||| ||| || |||||| |||||| Sbjct 37943 ACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCA 37884 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| |||||||| | || || |||||||| || ||||| |||||||||||||| | Sbjct 37883 AGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 37824 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | | ||| ||||||| ||| | || ||| Sbjct 37823 ATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTG 37764 Query 118710 CCGGT 118714 ||||| Sbjct 37763 CCGGT 37759 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || || || || ||||||||||| ||| || |||||| |||||| Sbjct 38627 ACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCA 38568 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| |||||||| |||| || |||||||| || || || |||||||||||||| | Sbjct 38567 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 38508 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | ||| || || | || | || || Sbjct 38507 ATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTCTTT 38448 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 38447 CCAGTGAGGGTCTTGACGAAAATCTGCAT 38419 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || || |||||||||||| | || || |||||| ||||| Sbjct 38166 GTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCAAGCTG 38107 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || |||||||| || ||||| |||||||||||||| || || Sbjct 38106 CTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 38047 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||| | ||| ||||| | ||| | || || || || Sbjct 38046 GGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTTCCAGT 37987 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || ||||||||||| Sbjct 37986 CAGAGTCTTGACGAAAATCTGCAT 37963 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || | ||| || |||||| Sbjct 38399 ACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCCTCA 38340 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | ||||||||||| ||||| || || |||||||||||||| | Sbjct 38339 AGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGA 38280 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | ||||||||| | ||| | || || Sbjct 38279 ATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTCTTA 38220 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||| Sbjct 38219 CCAGTGAGGGTCTTGACGAAGATCTGCAT 38191 >seq157 Length=65766 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| || | ||||| |||||| ||||| || ||||| |||| Sbjct 45138 TTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 45079 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 |||||||||||||| || || ||||||||||| || || || || || | ||| Sbjct 45078 AGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 45019 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| | ||| ||||||| ||| | ||| || || || || || || || ||| Sbjct 45018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAACGAAA 44959 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 44958 ATCTGCAT 44951 >seq3 Length=407529 Score = 114 bits (126), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || | |||||| ||||||| Sbjct 21574 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCG 21515 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || |||||||| || || || ||||||||||| || Sbjct 21514 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGG 21455 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||||||||| | ||| | || || Sbjct 21454 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTA 21395 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGC 118741 || ||||| || || || ||| ||||||||| Sbjct 21394 CCCGTCAGGGTCTTGACGAAA--CTGCATGGC 21365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826994973648