Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq116 114 3e-20
>seq116
Length=85249
Score = 114 bits (126), Expect = 3e-20
Identities = 421/654 (64%), Gaps = 38/654 (6%)
Strand=Plus/Minus
Query 94408 TCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCAC 94467
||||| |||||||||| |||| || || ||||| | | ||| | ||||||||||||
Sbjct 68974 TCATACTTCTCGTACAGAGCCTCGAATTCATCGCCGTAGCAGTCAGCCAGGCCAGGGCAC 68915
Query 94468 TCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTTCACTCTCTCCATGAAG 94521
|||| |||||||||||| | ||| ||||||| || | | || ||||||
Sbjct 68914 TCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCA------ATACGCTTCATGAAC 68861
Query 94522 AGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGCA 94581
||||||| | ||| | ||| |||| ||||| | | | | || || || ||| |
Sbjct 68860 AGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTGCCGTGA 68801
Query 94582 TTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGGCT 94641
||||| | | || | || || ||||| ||||||| || ||| || ||
Sbjct 68800 TTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGATAAATAGCA 68741
Query 94642 GCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATT 94701
||| || | ||||| || |||||| ||| | ||| | ||| ||||
Sbjct 68740 AAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACA 68681
Query 94702 TGGAG-----GAACG---CCATGAGACC-AGGGTGGGTACCACTCCATGACGAAATGGGG 94752
|||| ||||| || | ||| | || ||||||| || | || |
Sbjct 68680 CGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGC----GATGTAAGAG-- 68627
Query 94753 CTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATG 94812
|| | || | | | |||| || || ||| | || || || ||||||| ||
Sbjct 68626 ---CCGGTAGCACGGATACGGTGAACGTTGAGGCCAATACCACCCGCCATCTTGGAAATC 68570
Query 94813 ATTGC-CGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAG 94871
|| || | || | ||| |||||||| |||||||||||||| ||||| | | | | |
Sbjct 68569 ATAGCACAAGTCTTCAAG-GTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAAC 68511
Query 94872 AAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGC 94931
||||||||||| || || || | | || ||| ||| ||||| |||||||| ||
Sbjct 68510 CAGGAAGCACGAAGAGAGCTGCGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGGATGC 68451
Query 94932 ATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGA---TGTC 94988
||| || || | | || |||||||| | || || || | ||| | || ||||
Sbjct 68450 ATGAGTGAAGAACTTGCTAGACATGAGGTTGTAAGTCTCCAGAACACGCTCGACATTGTC 68391
Query 94989 TGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042
|| || ||| ||||| |||||||| ||||||| ||| |||||||||||
Sbjct 68390 ---ACCCCAAACGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCAAC 68340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989575834695020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |